UNIX and Perl to the Rescue!
UNIX and Perl to the Rescue!

Author: Keith Bradnam

Publisher: Cambridge University Press

Published: 2012-07-19

Total Pages: 429

ISBN-13: 1107377773

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Your research has generated gigabytes of data and now you need to analyse it. You hate using spreadsheets but it is all you know, so what else can you do? This book will transform how you work with large and complex data sets, teaching you powerful programming tools for slicing and dicing data to suit your needs. Written in a fun and accessible style, this step-by-step guide will inspire and inform non-programmers about the essential aspects of Unix and Perl. It shows how, with just a little programming knowledge, you can write programs that could save you hours, or even days. No prior experience is required and new concepts are introduced using numerous code examples that you can try out for yourself. Going beyond the basics, the authors touch upon many broader topics that will help those new to programming, including debugging and how to write in a good programming style.

UNIX and Perl to the Rescue!
UNIX and Perl to the Rescue!

Author: Keith Bradnam

Publisher: Cambridge University Press

Published: 2012-07-19

Total Pages: 429

ISBN-13: 1107000688

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An accessible guide to learning the key features of Unix and Perl, written with the non-programmer in mind.

Automating System Administration with Perl
Automating System Administration with Perl

Author: David N. Blank-Edelman

Publisher: "O'Reilly Media, Inc."

Published: 2009-05-14

Total Pages: 670

ISBN-13: 0596555636

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If you do systems administration work of any kind, you have to deal with the growing complexity of your environment and increasing demands on your time. Automating System Administration with Perl, Second Edition, not only offers you the right tools for your job, but also suggests the best way to approach specific problems and to securely automate recurring tasks. Updated and expanded to cover the latest operating systems, technologies, and Perl modules, this edition of the "Otter Book" will help you: Manage user accounts Monitor filesystems and processes Work with configuration files in important formats such as XML and YAML Administer databases, including MySQL, MS-SQL, and Oracle with DBI Work with directory services like LDAP and Active Directory Script email protocols and spam control Effectively create, handle, and analyze log files Administer network name and configuration services, including NIS, DNS and DHCP Maintain, monitor, and map network services, using technologies and tools such as SNMP, nmap, libpcap, GraphViz and RRDtool Improve filesystem, process, and network security This edition includes additional appendixes to get you up to speed on technologies such as XML/XPath, LDAP, SNMP, and SQL. With this book in hand and Perl in your toolbox, you can do more with less -- fewer resources, less effort, and far less hassle.

Bioinformatics Data Skills
Bioinformatics Data Skills

Author: Vince Buffalo

Publisher: "O'Reilly Media, Inc."

Published: 2015-07-01

Total Pages: 613

ISBN-13: 144936750X

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Learn the data skills necessary for turning large sequencing datasets into reproducible and robust biological findings. With this practical guide, youâ??ll learn how to use freely available open source tools to extract meaning from large complex biological data sets. At no other point in human history has our ability to understand lifeâ??s complexities been so dependent on our skills to work with and analyze data. This intermediate-level book teaches the general computational and data skills you need to analyze biological data. If you have experience with a scripting language like Python, youâ??re ready to get started. Go from handling small problems with messy scripts to tackling large problems with clever methods and tools Process bioinformatics data with powerful Unix pipelines and data tools Learn how to use exploratory data analysis techniques in the R language Use efficient methods to work with genomic range data and range operations Work with common genomics data file formats like FASTA, FASTQ, SAM, and BAM Manage your bioinformatics project with the Git version control system Tackle tedious data processing tasks with with Bash scripts and Makefiles

Manual of Environmental Microbiology
Manual of Environmental Microbiology

Author: Cindy H. Nakatsu

Publisher: John Wiley & Sons

Published: 2020-08-11

Total Pages:

ISBN-13: 155581882X

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The single most comprehensive resource for environmental microbiology Environmental microbiology, the study of the roles that microbes play in all planetary environments, is one of the most important areas of scientific research. The Manual of Environmental Microbiology, Fourth Edition, provides comprehensive coverage of this critical and growing field. Thoroughly updated and revised, the Manual is the definitive reference for information on microbes in air, water, and soil and their impact on human health and welfare. Written in accessible, clear prose, the manual covers four broad areas: general methodologies, environmental public health microbiology, microbial ecology, and biodegradation and biotransformation. This wealth of information is divided into 18 sections each containing chapters written by acknowledged topical experts from the international community. Specifically, this new edition of the Manual Contains completely new sections covering microbial risk assessment, quality control, and microbial source tracking Incorporates a summary of the latest methodologies used to study microorganisms in various environments Synthesizes the latest information on the assessment of microbial presence and microbial activity in natural and artificial environments The Manual of Environmental Microbiology is an essential reference for environmental microbiologists, microbial ecologists, and environmental engineers, as well as those interested in human diseases, water and wastewater treatment, and biotechnology.

Minimal Perl
Minimal Perl

Author: Tim Maher

Publisher: Manning Publications

Published: 2006-10-01

Total Pages: 503

ISBN-13: 1932394508

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No-nonsense and practical, yet with wit and charm. A joy to read."" -Dan Sanderson, Software Developer, Amazon.com ""Shows style, not just facts-valuable."" -Brian Downs, former Training Director, Lucent Technologies ""Brilliant, never tedious-highly recommended!"" -Jon Allen, Maintainer of perldoc.perl.org ""You could have chosen no better primer than this book."" -Damian Conway, from the Foreword Perl is a complex language that can be difficult to master. Perl advocates boast that ""There's More Than One Way To Do It,"" but do you really want to learn several ways of saying the same thing to a computer? To make Perl more accessible, Dr. Tim Maher has over the years designed and taught an essential subset of the language that is smaller, yet practical and powerful. With this engaging book you can now benefit from ""Minimal Perl,"" even if all you know about Unix is grep. You will learn how to write simple Perl commands-many just one-liners-that go far beyond the limitations of Unix utilities, and those of Linux, MacOS/X, etc. And you'll acquire the more advanced Perl skills used in scripts by capitalizing on your knowledge of related Shell resources. Sprinkled throughout are many Unix-specific Perl tips. This book is especially suitable for system administrators, webmasters, and software developers.

Intermediate Perl
Intermediate Perl

Author: Randal L. Schwartz

Publisher: "O'Reilly Media, Inc."

Published: 2012-07-26

Total Pages: 397

ISBN-13: 1449343805

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This book picks up right where Learning Perl leaves off. With Intermediate Perl, you’ll graduate from short scripts to much larger programs, using features that make Perl a general-purpose language. This gentle but thorough guide introduces you to modules, complex data structures, and object-oriented programming. Each chapter is small enough to be read in just an hour or two, ending with exercises to help you practice what you’ve learned. If you’re familiar with the material in Learning Perl and have the ambition to go further, Intermediate Perl will teach you most of the core Perl language concepts you need for writing robust programs on any platform. Topics include: Packages and namespaces References and scoping, including regular expression references Manipulating complex data structures Object-oriented programming Writing and using modules Testing Perl code Contributing to CPAN Just like Learning Perl, material in this book closely follows the popular introductory Perl course the authors have taught since 1991. This second edition covers recent changes to the language up to version 5.14.

Perl for System Administration
Perl for System Administration

Author: David N. Blank-Edelman

Publisher: "O'Reilly Media, Inc."

Published: 2000

Total Pages: 452

ISBN-13: 9781565926097

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Some people plan to become administrators. The rest of us are thrust into it: we are webmasters, hobbyists, or just the default "technical people" on staff who are expected to keep things running. After some stumbling around repeating the same steps over and over again (and occasionally paying the price when we forget one), we realize that we must automate these tasks, or suffer endless frustration. Thus enters Perl.The Perl programming language is ideal for writing quick yet powerful scripts that automate many administrative tasks. It's modular, it's powerful, and it's perfect for managing systems and services on many platforms.Perl for System Administration is designed for all levels of administrators--from hobbyists to card-carrying SAGE members--sysadmins on multi-platform sites. Written for several different platforms (Unix, Windows NT, and Mac OS), it's a guide to the pockets of administration where Perl can be most useful for sites large and small, including: Filesystem management User administration with a dash of XML DNS and other network name services Database administration using DBI and ODBC Directory services and frameworks like LDAP and ADSI Using email for system administration Working with log files of all kinds Each chapter concentrates on a single administrative area, discusses the possible pitfalls, and then shows how Perl comes to the rescue. Along the way we encounter interesting Perl features and tricks, with many extended examples and complete programs. The scripts included in the book can simply be used as written or with minimal adaptation. But it's likely that readers will also get a taste of what Perl can do, and start extending those scripts for tasks that we haven't dreamed of.Perl for System Adminstration doesn't attempt to teach the Perl language, but it is an excellent introduction to the power and flexibility of Perl, and it whets the appetite to learn more. It's for anyone who needs to use Perl for system administration and needs to hit the ground running.

Pro Perl Debugging
Pro Perl Debugging

Author: Andy Lester

Publisher: Apress

Published: 2006-11-01

Total Pages: 278

ISBN-13: 1430200448

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*Surpasses archaic debugging practices. *Introduces advanced debugger topics such as customization, optimization and extension. *Serves as a valuable resource for developing and deploying rock-solid Perl applications. *There is no direct competition for an advanced and comprehensive debugging book.