This volume, part of the Advances in Molecular Biology series, presents work by pioneers in the field and is the first publication devoted solely to the yeast two-hybrid system. It includes detailed protocols, practical advice on troubleshooting, and suggestions for future development. In addition, it illustrates how to construct an activation domain hybrid library, how to identify mutations that disrupt an interaction, and how to use the system in mammalian cells. Many of the contributors have developed new applications and variations of the technique.
The yeast two-hybrid system is one of the most widely used and productive techniques available for investigating the macromolecular interactions that affect virtually all biological processes. In Two-Hybrid Systems: Methods and Protocols, Paul N. MacDonald has assembled a collection of these powerful molecular tools for examining and characterizing protein-protein, protein-DNA, and protein-RNA interactions. The techniques range from the most basic (introducing plasmids into yeasts, interaction assays, and recovering the plasmids from yeast) to the most advanced alternative strategies (involving one-hybrid, split two-hybrid, three-hybrid, membrane recruitment systems, and mammalian systems). Methods are also provided for dealing with the well-known problems of artifacts and false positives and for identifying the interacting partners in important biological systems, including the Smad and nuclear receptor pathways. To ensure ready reproducibility and robust results, each technique is described in step-by-step detail by researchers who employ it regularly. Comprehensive and highly practical, Two-Hybrid Systems: Methods and Protocols not only reveals how the great variety of plasmid vectors and approaches may be optimally deployed, but also quickly empowers novices to establish two-hybrid systems in their laboratories, and experienced researchers to expand their repertoire of techniques.
Proteins are indispensable players in virtually all biological events. The functions of proteins are coordinated through intricate regulatory networks of transient protein-protein interactions (PPIs). To predict and/or study PPIs, a wide variety of techniques have been developed over the last several decades. Many in vitro and in vivo assays have been implemented to explore the mechanism of these ubiquitous interactions. However, despite significant advances in these experimental approaches, many limitations exist such as false-positives/false-negatives, difficulty in obtaining crystal structures of proteins, challenges in the detection of transient PPI, among others. To overcome these limitations, many computational approaches have been developed which are becoming increasingly widely used to facilitate the investigation of PPIs. This book has gathered an ensemble of experts in the field, in 22 chapters, which have been broadly categorized into Computational Approaches, Experimental Approaches, and Others.
This book is about dynamical systems that are "hybrid" in the sense that they contain both continuous and discrete state variables. Recently there has been increased research interest in the study of the interaction between discrete and continuous dynamics. The present volume provides a first attempt in book form to bring together concepts and methods dealing with hybrid systems from various areas, and to look at these from a unified perspective. The authors have chosen a mode of exposition that is largely based on illustrative examples rather than on the abstract theorem-proof format because the systematic study of hybrid systems is still in its infancy. The examples are taken from many different application areas, ranging from power converters to communication protocols and from chaos to mathematical finance. Subjects covered include the following: definition of hybrid systems; description formats; existence and uniqueness of solutions; special subclasses (variable-structure systems, complementarity systems); reachability and verification; stability and stabilizability; control design methods. The book will be of interest to scientists from a wide range of disciplines including: computer science, control theory, dynamical system theory, systems modeling and simulation, and operations research.
This book is the first of its kind in the field of protein microarrays and addresses novel strategies for constructing highly functional and biocompatible microarrays for screening proteins. The list of authors consisting of world leading experts provide a roadmap for solving the complex challenges that are currently faced while monitoring protein-protein interactions over a wide range of microarray platforms. In doing so, they also offer a comprehensive overview of microarray surface chemistry, detection technologies, fabrication options for array development, and data analysis of numerous types of protein interactions. Topics covered include: -Types of biomolecular interactions -Surface chemistry -Detection technologies -Spotting technologies -Bioinformatics/data analysis. While primarily intended to serve as a reference for researchers and students embarking on the exciting fields of proteomics, drug discovery and clinical diagnostics, this technology is also expected to potentially impact the areas of food diagnostics, environmental monitoring and national security.
"Hybrid systems are those that-unlike classical systems-exhibit both discrete changes, or "jumps", and continuous changes, or "flow." The canonical example of a hybrid system is a bouncing ball: the ball's speed changes continuously between bounces, but there is a discrete jump in velocity each time the ball impacts the ground. Hybrid systems feature widely across disciplines, including in biology, computer science, and mechanical engineering; examples range from fireflies to self-driving cars. Although classical control theory provides powerful tools for analyzing systems that exhibit either flow or jumps, it is ill-equipped to handle hybrid systems, which feature both behaviors. In Hybrid Feedback Control, Ricardo Sanfelice presents a self-contained introduction to the control of hybrid systems, and develops new tools for their design and analysis. This monograph uses hybrid systems notation to present a new, unified control theory framework, thus filling an important gap in the control theory literature. In addition to presenting this theoretical framework, the book also includes a variety of examples and exercises, a Matlab toolbox, and a summary at the beginning of each chapter. The book was originally used in a series of lectures on the topic, and will find a modest amount of crossover course use. The book will also find use outside the field of control, particularly in dynamical systems theory, applied mathematics, and computer science"--
Hybrid Technologies for Power Generation addresses the topics related to hybrid technologies by coupling conventional thermal engines with novel technologies, including fuel cells, batteries, thermal storage and electrolysis, and reporting on the most recent advances concerning transport and stationary applications. Potential operating schemes of hybrid power generation systems are covered, highlighting possible combinations of technology and guideline selection according to the energy demands of end-users. Going beyond state-of-the-art technological developments for processes, devices and systems, this book discusses the environmental impact and existing hurdles of moving from a single device to new approaches for efficient energy generation, transfer, conversion, high-density storage and consumption. By describing the practical viability of novel devices coupled to conventional thermal devices, this book has a decisive impact in energy system research, supporting those in the energy research and engineering communities. Covers detailed thermodynamic requirements for multiple smart technologies included in hybrid systems (i.e., FC, electrolysers, supercapacitors, batteries, thermal storage, etc.) Features fundamental analysis and modeling to optimize the combination of smart technologies with traditional engines Details protocols for the analysis, operation and requirements of large-scale production
Solar Hybrid Systems: Design and Application discusses the key power generation characteristics of solar systems and explores the growing need for hybrid systems. The authors use real-life examples to explain the disadvantages of solar systems without hybridization and to demonstrate the various applications hybrid solar systems can be used for, paying special attention to its integration with energy storage systems. The book also discusses the impact of hybridization and how this can improve power generation quality along with investigating novel and advanced hybrid solar systems. This is a useful reference for engineers and researchers involved in both the development and application of hybrid solar systems, and features topics such as solutions for the intermittence of renewable energy sources; on-gird and off-grid solar hybrid systems; the simulation, design and application of hybrid solar systems; the role of energy storage systems in solar hybrid applications; and the future of electric vehicles using solar hybrid systems. Demonstrates the benefits of hybrid solar systems and why they are needed Features practical advice on designing hybrid solar systems Includes key findings and real-world examples to illustrate the applications of hybrid solar systems
This volume details protocols that cover the broad arsenal of techniques used to study a secretion system from A to Z. Chapters focus on identifying and localizing the different subunits, defining interactions within subunits, monitoring conformational changes, purifying and imaging of large complexes, defining the assembly pathway by fluorescence microscopy and the role of energy during assembly and/or secretion, identifying secreted effectors as well as reporters to follow effector transport. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Bacterial Protein Secretion Systems: Methods and Protocol aims to provide techniques that are not restricted to the study of secretion systems but are also of specific interest for any researcher interested on multi-protein complexes of the bacterial cell envelope.
This is an in-depth examination of circadian biology, presented by leading researchers in the field. Methods for analysis of rhythmic readouts in select model organisms are included. This cutting-edge collection of protocols is adaptable for research at every level, and represents the huge strides that chronobiologists have made over the past two decades. Circadian biologists at all research levels will realize tremendous benefit from this extraordinary collection.
