Stochastic Modeling of AIDS Epidemiology and HIV Pathogenesis

Stochastic Modeling of AIDS Epidemiology and HIV Pathogenesis

Author: W. Y. Tan

Publisher: World Scientific

Published: 2000

Total Pages: 458

ISBN-13: 9789810241223

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This book discusses systematically treatment on the development of stochastic, statistical and state space models of the HIV epidemic and of HIV pathogenesis in HIV-infected individuals, and presents the applications of these models. The book is unique in several ways: (1) it uses stochastic difference and differential equations to present the stochastic models of the HIV epidemic and HIV pathogenesis; in this sense, the deterministic models are considered as special cases when the numbers of different type of people or cells are very large (2) it provides, a critical analysis of deterministic and statistical models in the literature; (3) it develops state space models by combining stochastic models and statistical models; and (4) it provides a detailed discussion on the pros and cons of the different modeling approaches. This book is the first to introduce state space models for the HIV epidemic. It is also the first to develop stochastic models and state space models for the HIV pathogenesis in HIV-infected individuals.


Deterministic and Stochastic Models of AIDS Epidemics and HIV Infections with Intervention

Deterministic and Stochastic Models of AIDS Epidemics and HIV Infections with Intervention

Author: W. Y. Tan

Publisher: World Scientific

Published: 2005

Total Pages: 610

ISBN-13: 9812561390

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- Only book on extensive, deterministic models, statistic models, stochastic models and state space models and statistical methods for HIV epidemic involving IV drug usage and HIV epidemic in homosexual populations. - Provides most recent biological insights into HIV pathogenesis and HIV kinetics at the cellular level, and illustrates how to build up mathematical models based on these biological insights. - Only publication that provides in-depth analysis of HAART treatment protocols and discusses possible improvements to the HAART protocol. The book also provides connection between pharmacokinetics with treatment in HIV-infected individuals.


Quantitative Methods for HIV/AIDS Research

Quantitative Methods for HIV/AIDS Research

Author: Cliburn Chan

Publisher: CRC Press

Published: 2017-08-07

Total Pages: 360

ISBN-13: 1351647121

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Quantitative Methods in HIV/AIDS Research provides a comprehensive discussion of modern statistical approaches for the analysis of HIV/AIDS data. The first section focuses on statistical issues in clinical trials and epidemiology that are unique to or particularly challenging in HIV/AIDS research; the second section focuses on the analysis of laboratory data used for immune monitoring, biomarker discovery and vaccine development; the final section focuses on statistical issues in the mathematical modeling of HIV/AIDS pathogenesis, treatment and epidemiology. This book brings together a broad perspective of new quantitative methods in HIV/AIDS research, contributed by statisticians and mathematicians immersed in HIV research, many of whom are current or previous leaders of CFAR quantitative cores. It is the editors’ hope that the work will inspire more statisticians, mathematicians and computer scientists to collaborate and contribute to the interdisciplinary challenges of understanding and addressing the AIDS pandemic.


Stochastic Analysis of AIDS Epidemiology

Stochastic Analysis of AIDS Epidemiology

Author: Moremi Morire OreOluwapo Labeodan

Publisher:

Published: 2013

Total Pages:

ISBN-13:

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In this thesis, some issues about the human immunodeficiency virus (HIV) and acquired immunodeficiency syndrome (AIDS) have been addressed by concentrating on the stochastic modelling of the dynamics of the viruses. The aim of this thesis is to determine parameters such as the mean number of free HIV, infectious free HIV and non-infectious free HIV which are essential in determining incubation period of the virus, the disease progression of an infected individual and the efficacy of the treatment used. This thesis comprises of six chapters. The first two chapters are introductory to the viruses and reasons why HIV-1 is given priority over HIV-2 are given. The pathogenesis of the virus is addressed. This is because knowledge of the pathogenesis and strains of the virus has become essential in the study of HIV in vivo dynamics which is still paving ways into extensive research of the ways to contain the disease better. In chapter three the distribution functions of the HIV incubation period and seroconversion time are determined via stochastic models by building on previous work of Lui et al. (1988) and Medley et al. (1988). Also AIDS incidence projection was done using the Backcalculation method. Chapter four deals with the formulation of stochastic model of the dynamics of HIV in an infected individual. Two stochastic models are proposed and analysed for the dynamics of the viral load in a HIV infected person and the multiplication process of the virions inside an infected T4 cell. Also a numerical illustration of the stochastic models derived is given. In chapter five, the T4 cell count which is considered one of the markers of disease progression in HIV infected individual is examined. WHO has recently advocated that countries encourage HIV infected individuals to commence antiretroviral treatments once their T4 cell count is 350 cells per ml of blood. This is because when the T4 cell count is low, the T4 cells are unable to mount an effective immune response against antigens (and any such foreign matters in the body) and consequently, the individual becomes susceptible to opportunistic infections and lymphomas. We developed a stochastic catastrophe model to obtain the mean, variance and covariance of the uninfected, infected and lysed T4 cells: also the amount of toxin produced in a HIV infected person from the time of infection to the present time is derived. A numerical illustration of the correlation structure between uninfected and infected T4 cells, and infected and lysed T4 cells is portrayed. Antiretrioviral treatments were introduced while we await a cure. Treatment with single drug failed due to the fact that HIV evolved rapidly because of its high replication rate. Thus drug resistance to single therapeutic treatment in HIV infected individuals has promoted research into combined treatments. In chapter six a stochastic model under combined therapeutic treatment is derived. Mean numbers of free HIV, infectious free HIV and non-infectious free HIV are obtained. Variance and co-variance structures of our parameters were obtained unlike in previous work of Perelson et al. (1996), Tan and Xiang (1999).


State Space Modeling on Viral Dynamics of in Vivo HIV-1 Infection in an Antiretroviral Therapy

State Space Modeling on Viral Dynamics of in Vivo HIV-1 Infection in an Antiretroviral Therapy

Author: Zhengfeng Liu

Publisher:

Published: 2010

Total Pages:

ISBN-13:

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This dissertation endeavors to reveal the effect of an antiretroviral therapy by modeling viral dynamics of HIV-1 infection. To accomplish the difficult goal, we develop a stochastic model to study the viral dynamics of HIV-1 infection in the antiretroviral treatment. The model characterizes the viral dynamical system of HIV-1 infection by a complex setting of time-varying or constant parameters and describes the stochastic process of viral dynamics in the antiretroviral treatment by a group of stochastic difference equations with respect to the state variables which are the random number of different strains of HIV-1 or different types of virus producing cells. We find a group of optimized values of governing the viral dynamics for the model parameters by means of the genetic algorithm under certain boundary conditions. The viral load and mutation frequency of the drug-resistant HIV-1 predicted by the numerical solutions for the expected number of state variables can thus fit the clinic data to a certain degree. We further devise an extended Kalman filter and apply the multilevel Gibbs sampling to identify the stochastic features of viral dynamics, which are generally realized by combining the different sources of information both from the stochastic model and observation model in the so-called state space modeling. As a result we are capable of understanding what might happen in viremia for a HIV-1-infected individual in the antiretroviral therapy and finally get to know how the drug-resistant HIV-1 emerged and became dominant in the plasma viral population, which is pertinent to the data from the AIDS patient. Based on our study, we propose a hypothesis for HIV-1 pathogenesis when suffered from drug intervention. Our hypothesis indicates that HIV-1 infection should share some common features in viral infection by any other species of viruses, especially retroviruses, except that the target cells are CD4+ T cells crucial in the immune system. It reflects more evidences of hypothesis immune activation in the HIV-1 pathogenesis that has gained popularity in current AIDS research. It is worthy while to be incorporated into mathematical models on viral dynamics in other situations of antiretroviral therapy and accordingly needs more examinations. .


Stochastic Processes in Epidemiology

Stochastic Processes in Epidemiology

Author: Charles J. Mode

Publisher: World Scientific

Published: 2000

Total Pages: 765

ISBN-13: 981024097X

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AIDS (autoimmune deficiency syndrome) is a devastating human disease cause by HIV, a human immunodeficiency virus, which may be transmitted by either sexual or other contacts in which body fluids are exchanged. Cases of AIDS have been reported in a majority of countries throughout the world, indicating that the HIV/AIDS epidemic is international in scope. This book deals with the mathematical and statistical techniques underlying the models used to understand the population dynamics of not only HIV/AIDS but also other infectious diseases. Attention is given to the development strategies for the prevention and control of the international epidemic within the frameworks of the models. Two distinguishing features of the book are the incorporation of stochastic and deterministic formulations within a unifying conceptual framework and the discussion of issues related to the mathematical designs of models, which are necessary for the rigorous utilization of computer-intensive methods. The book will be of value to applied mathematicians, biomathematicians, biostatisticians, epidemiologists and other scientists interested in applying mathematics and computers to not only the HIV/AIDS epidemic but also other fields of epidemiology.


Chimpanzees in Biomedical and Behavioral Research

Chimpanzees in Biomedical and Behavioral Research

Author: National Research Council

Publisher: National Academies Press

Published: 2011-12-05

Total Pages: 200

ISBN-13: 0309220424

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For many years, experiments using chimpanzees have been instrumental in advancing scientific knowledge and have led to new medicines to prevent life-threatening and debilitating diseases. However, recent advances in alternate research tools have rendered chimpanzees largely unnecessary as research subjects. The Institute of Medicine, in collaboration with the National Research Council, conducted an in-depth analysis of the scientific necessity for chimpanzees in NIH-funded biomedical and behavioral research. The committee concludes that while the chimpanzee has been a valuable animal model in the past, most current biomedical research use of chimpanzees is not necessary, though noted that it is impossible to predict whether research on emerging or new diseases may necessitate chimpanzees in the future.