Random Knotting And Linking
Random Knotting And Linking

Author: Kenneth C Millett

Publisher: World Scientific

Published: 1994-12-09

Total Pages: 207

ISBN-13: 9814501425

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This volume includes both rigorous asymptotic results on the inevitability of random knotting and linking, and Monte Carlo simulations of knot probability at small lengths. The statistical mechanics and topology of surfaces on the d-dimensional simple cubic lattice are investigated. The energy of knots is studied both analytically and numerically. Vassiliev invariants are investigated and used in random knot simulations. A mutation scheme which leaves the Jones polynomial unaltered is described. Applications include the investigation of RNA secondary structure using Vassiliev invariants, and the direct experimental measurement of DNA knot probability as a function of salt concentration in random cyclization experiments on linear DNA molecules. The papers in this volume reflect the diversity of interest across science and mathematics in this subject, from topology to statistical mechanics to theoretical chemistry to wet-lab molecular biology.

Physical and Numerical Models in Knot Theory
Physical and Numerical Models in Knot Theory

Author: Jorge Alberto Calvo

Publisher: World Scientific

Published: 2005

Total Pages: 642

ISBN-13: 9812703462

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The physical properties of knotted and linked configurations in space have long been of interest to mathematicians. More recently, these properties have become significant to biologists, physicists, and engineers among others. Their depth of importance and breadth of application are now widely appreciated and valuable progress continues to be made each year. This volume presents several contributions from researchers using computers to study problems that would otherwise be intractable. While computations have long been used to analyze problems, formulate conjectures, and search for special structures in knot theory, increased computational power has made them a staple in many facets of the field. The volume also includes contributions concentrating on models researchers use to understand knotting, linking, and entanglement in physical and biological systems. Topics include properties of knot invariants, knot tabulation, studies of hyperbolic structures, knot energies, the exploration of spaces of knots, knotted umbilical cords, studies of knots in DNA and proteins, and the structure of tight knots. Together, the chapters explore four major themes: physical knot theory, knot theory in the life sciences, computational knot theory, and geometric knot theory.

The Knot Book
The Knot Book

Author: Colin Conrad Adams

Publisher: American Mathematical Soc.

Published: 2004

Total Pages: 330

ISBN-13: 0821836781

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Knots are familiar objects. Yet the mathematical theory of knots quickly leads to deep results in topology and geometry. This work offers an introduction to this theory, starting with our understanding of knots. It presents the applications of knot theory to modern chemistry, biology and physics.

Physical Knots: Knotting, Linking, and Folding Geometric Objects in $\mathbb {R}^3$
Physical Knots: Knotting, Linking, and Folding Geometric Objects in $\mathbb {R}^3$

Author: Jorge Alberto Calvo

Publisher: American Mathematical Soc.

Published: 2002

Total Pages: 356

ISBN-13: 082183200X

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The properties of knotted and linked configurations in space have long been of interest to physicists and mathematicians. More recently and more widely, they have become important to biologists, chemists, computer scientists, and engineers. The depth and breadth of their applications are widely appreciated. Nevertheless, fundamental and challenging questions remain to be answered. Based on a Special Session at the AMS Sectional Meeting in Las Vegas (NV) in April 2001, this volumediscusses critical questions and introduces new ideas that will stimulate multi-disciplinary applications. Some of the papers are primarily theoretical; others are experimental. Some are purely mathematical; others deal with applications of mathematics to theoretical computer science, engineering,physics, biology, or chemistry. Connections are made between classical knot theory and the physical world of macromolecules, such as DNA, geometric linkages, rope, and even cooked spaghetti. This book introduces the world of physical knot theory in all its manifestations and points the way for new research. It is suitable for a diverse audience of mathematicians, computer scientists, engineers, biologists, chemists, and physicists.

Ideal Knots
Ideal Knots

Author: Andrzej Stasiak

Publisher: World Scientific

Published: 1998

Total Pages: 426

ISBN-13: 9810235305

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In this book, experts in different fields of mathematics, physics, chemistry and biology present unique forms of knots which satisfy certain preassigned criteria relevant to a given field. They discuss the shapes of knotted magnetic flux lines, the forms of knotted arrangements of bistable chemical systems, the trajectories of knotted solitons, and the shapes of knots which can be tied using the shortest piece of elastic rope with a constant diameter.

Knots and Links
Knots and Links

Author: Peter R. Cromwell

Publisher: Cambridge University Press

Published: 2004-10-14

Total Pages: 356

ISBN-13: 9780521548311

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A richly illustrated 2004 textbook on knot theory; minimal prerequisites but modern in style and content.

Knot Theory and Its Applications
Knot Theory and Its Applications

Author: Kunio Murasugi

Publisher: Springer Science & Business Media

Published: 2009-12-29

Total Pages: 348

ISBN-13: 0817647198

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This book introduces the study of knots, providing insights into recent applications in DNA research and graph theory. It sets forth fundamental facts such as knot diagrams, braid representations, Seifert surfaces, tangles, and Alexander polynomials. It also covers more recent developments and special topics, such as chord diagrams and covering spaces. The author avoids advanced mathematical terminology and intricate techniques in algebraic topology and group theory. Numerous diagrams and exercises help readers understand and apply the theory. Each chapter includes a supplement with interesting historical and mathematical comments.

Introductory Lectures on Knot Theory
Introductory Lectures on Knot Theory

Author: Louis H. Kauffman

Publisher: World Scientific

Published: 2012

Total Pages: 577

ISBN-13: 9814313009

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More recently, Khovanov introduced link homology as a generalization of the Jones polynomial to homology of chain complexes and Ozsvath and Szabo developed Heegaard-Floer homology, that lifts the Alexander polynomial. These two significantly different theories are closely related and the dependencies are the object of intensive study. These ideas mark the beginning of a new era in knot theory that includes relationships with four-dimensional problems and the creation of new forms of algebraic topology relevant to knot theory. The theory of skein modules is an older development also having its roots in Jones discovery. Another significant and related development is the theory of virtual knots originated independently by Kauffman and by Goussarov Polyak and Viro in the '90s. All these topics and their relationships are the subject of the survey papers in this book.

Topology and Geometry of Biopolymers
Topology and Geometry of Biopolymers

Author: Erica Flapan

Publisher:

Published: 2020

Total Pages: 248

ISBN-13: 9781470454562

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This book contains the proceedings of the AMS Special Session on Topology of Biopolymers, held from April 21-22, 2018, at Northeastern University, Boston, MA. The papers cover recent results on the topology and geometry of DNA and protein knotting using techniques from knot theory, spatial graph theory, differential geometry, molecular simulations, and laboratory experimentation. They include current work on the following topics: the density and supercoiling of DNA minicircles; the dependence of DNA geometry on its amino acid sequence; random models of DNA knotting; topological models of DNA r.

Topology and Geometry in Polymer Science
Topology and Geometry in Polymer Science

Author: Stuart G. Whittington

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 209

ISBN-13: 1461217121

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This IMA Volume in Mathematics and its Applications TOPOLOGY AND GEOMETRY IN POLYMER SCIENCE is based on the proceedings of a very successful one-week workshop with the same title. This workshop was an integral part of the 1995-1996 IMA program on "Mathematical Methods in Materials Science." We would like to thank Stuart G. Whittington, De Witt Sumners, and Timothy Lodge for their excellent work as organizers of the meeting and for editing the proceedings. We also take this opportunity to thank the National Science Foun dation (NSF), the Army Research Office (ARO) and the Office of Naval Research (ONR), whose financial support made the workshop possible. A vner Friedman Robert Gulliver v PREFACE This book is the product of a workshop on Topology and Geometry of Polymers, held at the IMA in June 1996. The workshop brought together topologists, combinatorialists, theoretical physicists and polymer scientists, who share an interest in characterizing and predicting the microscopic en tanglement properties of polymers, and their effect on macroscopic physical properties.