Bayesian Phylogenetics

Bayesian Phylogenetics

Author: Ming-Hui Chen

Publisher: CRC Press

Published: 2014-05-27

Total Pages: 398

ISBN-13: 1466500794

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Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists, systematists, ecologists, and epidemiologists to obtain answers to very detailed phylogenetic questions. Suitable for graduate-level researchers in statistics and biology, Bayesian Phylogenetics: Methods, Algorithms, and Applications presents a snapshot of current trends in Bayesian phylogenetic research. Encouraging interdisciplinary research, this book introduces state-of-the-art phylogenetics to the Bayesian statistical community and, likewise, presents state-of-the-art Bayesian statistics to the phylogenetics community. The book emphasizes model selection, reflecting recent interest in accurately estimating marginal likelihoods. It also discusses new approaches to improve mixing in Bayesian phylogenetic analyses in which the tree topology varies. In addition, the book covers divergence time estimation, biologically realistic models, and the burgeoning interface between phylogenetics and population genetics.


Majority Rule Versus Consensus

Majority Rule Versus Consensus

Author: James H. Read

Publisher: American Political Thought

Published: 2009

Total Pages: 296

ISBN-13:

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This text sheds light on the promise and limitations of democracy, showing that, despite the failure of Calhoun's remedy, his diagnosis of the potential injustice of majority rule must be taken seriously.


Calhoun

Calhoun

Author: Robert Elder

Publisher:

Published: 2021-02-16

Total Pages: 656

ISBN-13: 9780465096442

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John C. Calhoun's ghost still haunts America today. First elected to congress in 1810, Calhoun served as secretary of war during the war of 1812, and then as vice-president under two very different presidents, John Quincy Adams and Andrew Jackson. It was during his time as Jackson's vice president that he crafted his famous doctrine of "state interposition," which laid the groundwork for the south to secede from the union -- and arguably set the nation on course for civil war. Other accounts of Calhoun have portrayed him as a backward-looking traditionalist -- he was, after all, an outspoken apologist for slavery, which he defended as a "positive good." But he was also an extremely complex thinker, and thoroughly engaged in the modern world. He espoused many ideas that resonate strongly with popular currents today: an impatience for the spectacle and shallowness of politics, a concern about the alliance between wealth and power in government, and a skepticism about the United States' ability to spread its style of democracy throughout the world. Calhoun has catapulted back into the public eye in recent years, as the tensions he navigated and inflamed in his own time have surfaced once again. In 2015, a monument to him in Charleston, South Carolina became a flashpoint after a white supremacist murdered nine African-Americans in a nearby church. And numerous commentators have since argued that Calhoun's retrograde ideas are at the root of the modern GOP's problems with race. Bringing together Calhoun's life, his intellectual contributions -- both good and bad -- and his legacy, Robert Elder's book is a revelatory reconsideration of the antebellum South we thought we knew.


Patterns of Democracy

Patterns of Democracy

Author: Arend Lijphart

Publisher: Yale University Press

Published: 2012-01-01

Total Pages: 457

ISBN-13: 0300189125

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Examining 36 democracies from 1945 to 2010, this text arrives at conclusions about what type of democracy works best. It demonstrates that consensual systems stimulate economic growth, control inflation and unemployment, and limit budget deficits.


Madison's Metronome

Madison's Metronome

Author: Greg Weiner

Publisher: University Press of Kansas

Published: 2019-08-02

Total Pages: 208

ISBN-13: 0700628959

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In the wake of national crises and sharp shifts in the electorate, new members of Congress march off to Washington full of intense idealism and the desire for instant change—but often lacking in any sense of proportion or patience. This drive for instant political gratification concerned one of the key Founders, James Madison, who accepted the inevitability of majority rule but worried that an inflamed majority might not rule reasonably. Greg Weiner challenges longstanding suppositions that Madison harbored misgivings about majority rule, arguing instead that he viewed constitutional institutions as delaying mechanisms to postpone decisions until after public passions had cooled and reason took hold. In effect, Madison believed that one of the Constitution's primary functions is to act as a metronome, regulating the tempo of American politics. Weiner calls this implicit doctrine "temporal republicanism" to emphasize both its compatibility with and its contrast to other interpretations of the Founders' thought. Like civic republicanism, the "temporal" variety embodies a set of values—public-spiritedness, respect for the rights of others—broader than the technical device of majority rule. Exploring this fundamental idea of time-seasoned majority rule across the entire range of Madison's long career, Weiner shows that it did not substantially change over the course of his life. He presents Madison's understanding of internal constitutional checks and his famous "extended republic" argument as different and complementary mechanisms for improving majority rule by slowing it down, not blocking it. And he reveals that the changes we see in Madison's views of majority rule arise largely from his evolving beliefs about who, exactly, was behaving impulsively-whether abusive majorities in the 1780s, the Adams regime in the 1790s, the nullifiers in the 1820s. Yet there is no evidence that Madison's underlying beliefs about either majority rule or the distorting and transient nature of passions ever swayed. If patience was a fact of life in Madison's day—a time when communication and travel were slow-it surely is much harder to cultivate in the age of the Internet, 24-hour news, and politics based on instant gratification. While many of today's politicians seem to wed supreme impatience with an avowed devotion to original constitutional principles, Madison's Metronome suggests that one of our nation's great luminaries would likely view that marriage with caution.


Breaking Robert's Rules

Breaking Robert's Rules

Author: Lawrence Susskind

Publisher:

Published: 2023

Total Pages: 0

ISBN-13: 9780197702574

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'Robert's Rules of Order', written more than 150 years ago by a military man, are no longer relevant. America needs a new guide that spells out how to work together effectively in groups of all kinds, one that takes account of recent developments in the field of consensus building and dispute resolution. Enter the concensus-building approach, as introduced and explained in a step-by-step approach using realistic scenarios, by Susskind and Cruickshank.


Society's Choices

Society's Choices

Author: Institute of Medicine

Publisher: National Academies Press

Published: 1995-03-27

Total Pages: 560

ISBN-13: 0309051320

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Breakthroughs in biomedicine often lead to new life-giving treatments but may also raise troubling, even life-and-death, quandaries. Society's Choices discusses ways for people to handle today's bioethics issues in the context of America's unique history and cultureâ€"and from the perspectives of various interest groups. The book explores how Americans have grappled with specific aspects of bioethics through commission deliberations, programs by organizations, and other mechanisms and identifies criteria for evaluating the outcomes of these efforts. The committee offers recommendations on the role of government and professional societies, the function of commissions and institutional review boards, and bioethics in health professional education and research. The volume includes a series of 12 superb background papers on public moral discourse, mechanisms for handling social and ethical dilemmas, and other specific areas of controversy by well-known experts Ronald Bayer, Martin Benjamin, Dan W. Brock, Baruch A. Brody, H. Alta Charo, Lawrence Gostin, Bradford H. Gray, Kathi E. Hanna, Elizabeth Heitman, Thomas Nagel, Steven Shapin, and Charles M. Swezey.


Thinking about Democracy

Thinking about Democracy

Author: Arend Lijphart

Publisher: Routledge

Published: 2007-10-10

Total Pages: 317

ISBN-13: 1135980306

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This book draws on Professor Arend Lijphart’s lifetime experience of research and publication in democracy and comparative politics and collects together for the first time his most significant and influential work.


Phylogenetic Supertrees

Phylogenetic Supertrees

Author: Olaf R.P. Bininda-Emonds

Publisher: Springer Science & Business Media

Published: 2004-05-31

Total Pages: 547

ISBN-13: 1402023308

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This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.