Identification of Altered Cell Surface Glycoproteins and Micropattern Assay Development in the Context of Human Malignancies

Identification of Altered Cell Surface Glycoproteins and Micropattern Assay Development in the Context of Human Malignancies

Author: Jennifer Williams Bergstrom

Publisher:

Published: 2013

Total Pages:

ISBN-13:

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Metastatic melanoma and relapsed acute T cell lymphoblastic leukemia remain incurable despite major advancements in our understanding of these cancers. In some ways, the foundation for a cure has already been laid; many molecular targets for drug development are now clearly defined, and recently novel therapeutics have shown promise in the clinical setting. However, this immense progress has not translated into a marked increase in patient survival. This graduate project focused on two aims, which with further research and development may lead to a cure for these cancers. First, the development of a cellular-based high-throughput synergistic assay was looked at, that would allow for rapid screening of multiple drug combinations. Second, cancer-specific alterations in the cell surface high mannose glycoprotein profile were identified in the context of metastatic melanoma and T-ALL cells. The feasibility of these two aims is demonstrated by existing innovations and research. First, protein microarrays have been developed to isolate and characterize a variety of cell types. Second, growth factors and other molecules have been successfully printed onto these arrays. Third, cancer cells and cancer stem cells have been previously shown to have alterations in their cell surface glycome. As part of the first project, micropatterned silane and polyethylene glycol (PEG) coated glass slides were successfully developed, with these modifications acting as a non-fouling surface for cell attachment. On these slides cell-specific antibodies, antiCD3 and anti-GD3, were printed and demonstrated successful capture ofT-ALL and melanoma cell lines, respectively. However, the effectiveness of this cell capture needs further improvement, with regards to uniform cell seeding. Future studies will utilize recently developed epoxide coated slides, which allow for covalent attachment of capture antibodies. Additionally, anti-CD4 antibody will be printed for T-ALL cell capture. With respect to the characterization of the cell surface glycome of malignant melanoma and TALL cell lines versus their non- or less-malignant counterparts, we were able to successfully demonstrate that MHC class I and sodium/potassium A TPase proteins were differentially glycosylated on both of these diverging cancers. MHC class I had significantly higher expression on high metastatic potential B 16F 10 cells compared to B16FO cells (p-value = 0.014), and in Jurkat cells as compared to normal pan T cells (pvalue = 0.011). Additionally, sodium/potassium ATPase had significantly higher expression on B16F10 (p-value = 0.028) and Jurkat cells (p-value = 0.013) verses B16F0 and normal T cells, respectively. These proteins, along with other identified high mannose surface proteins are directly linked to cancer cell proliferation promotion. Additionally, the altered glycosylation patterns identified in this graduate project may have a direct impact on MHC class I and sodium/potassium A TPase' s roles in cancer cell promotion. Based on obtained data, future studies will focus on conforming the presence of identified proteins on the cell surface through antigen immunofluorescence labeling, and foot printing of high mannose glycans. Footprinting will be done to both determine the extent of glycosylation modifications occurring on cancer cells, as well to characterize any changes in protein conformation due to changes in glycosylation, as determined through in silica modeling.


Tumor Organoids

Tumor Organoids

Author: Shay Soker

Publisher: Humana Press

Published: 2017-10-20

Total Pages: 225

ISBN-13: 3319605119

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Cancer cell biology research in general, and anti-cancer drug development specifically, still relies on standard cell culture techniques that place the cells in an unnatural environment. As a consequence, growing tumor cells in plastic dishes places a selective pressure that substantially alters their original molecular and phenotypic properties.The emerging field of regenerative medicine has developed bioengineered tissue platforms that can better mimic the structure and cellular heterogeneity of in vivo tissue, and are suitable for tumor bioengineering research. Microengineering technologies have resulted in advanced methods for creating and culturing 3-D human tissue. By encapsulating the respective cell type or combining several cell types to form tissues, these model organs can be viable for longer periods of time and are cultured to develop functional properties similar to native tissues. This approach recapitulates the dynamic role of cell–cell, cell–ECM, and mechanical interactions inside the tumor. Further incorporation of cells representative of the tumor stroma, such as endothelial cells (EC) and tumor fibroblasts, can mimic the in vivo tumor microenvironment. Collectively, bioengineered tumors create an important resource for the in vitro study of tumor growth in 3D including tumor biomechanics and the effects of anti-cancer drugs on 3D tumor tissue. These technologies have the potential to overcome current limitations to genetic and histological tumor classification and development of personalized therapies.


Physics of Cancer

Physics of Cancer

Author: Claudia Mierke

Publisher: Iph001

Published: 2018-10-24

Total Pages: 500

ISBN-13: 9780750317511

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This revised second edition is improved linguistically with multiple increases of the number of figures and the inclusion of several novel chapters such as actin filaments during matrix invasion, microtubuli during migration and matrix invasion, nuclear deformability during migration and matrix invasion, and the active role of the tumor stroma in regulating cell invasion.


The Physics of Cancer

The Physics of Cancer

Author: Caterina A. M. La Porta

Publisher: Cambridge University Press

Published: 2017-04-20

Total Pages: 187

ISBN-13: 1108150330

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Recent years have witnessed an increasing number of theoretical and experimental contributions to cancer research from different fields of physics, from biomechanics and soft-condensed matter physics to the statistical mechanics of complex systems. Reviewing these contributions and providing a sophisticated overview of the topic, this is the first book devoted to the emerging interdisciplinary field of cancer physics. Systematically integrating approaches from physics and biology, it includes topics such as cancer initiation and progression, metastasis, angiogenesis, cancer stem cells, tumor immunology, cancer cell mechanics and migration. Biological hallmarks of cancer are presented in an intuitive yet comprehensive way, providing graduate-level students and researchers in physics with a thorough introduction to this important subject. The impact of the physical mechanisms of cancer are explained through analytical and computational models, making this an essential reference for cancer biologists interested in cutting-edge quantitative tools and approaches coming from physics.


Industrial Pharmaceutical Biotechnology

Industrial Pharmaceutical Biotechnology

Author: Heinrich Klefenz

Publisher: Wiley-VCH

Published: 2002-04-22

Total Pages: 328

ISBN-13:

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This volume focuses on pharmaceutical biotechnology as a key area of life sciences. The complete range of concepts, processes and technologies of biotechnology is applied in modern industrial pharmaceutical research, development and production. The results of genome sequencing and studies of biological-genetic function are combined with chemical, micro-electronic and microsystem technology to produce medical devices and diagnostic biochips. A multitude of biologically active molecules is expanded by additional novel structures created with newly arranged gene clusters and bio-catalytic chemical processes. New organisational structures in the co-operation of institutes, companies and networks enable faster knowledge and product development and immediate application of the results of research and process development. This book is the ideal source of information for scientists and engineers in research and development, for decision-makers in biotech, pharma and chemical corporations, as well as for research institutes, but also for founders of biotech companies and people working for venture capital corporations.


Biosensors for Virus Detection

Biosensors for Virus Detection

Author: Adil Denizli

Publisher: IOP Publishing Limited

Published: 2021-12-13

Total Pages: 275

ISBN-13: 9780750338653

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Developments and applications of biosensor platforms for analysis of viral infections including Coronavirus, HIV, Hepatitis, Ebola, Zika, Norovirus, Influenza, SARS etc. Embraces properties, fabrication, and recent research regarding optical, electrochemical, piezoelectric, fluorescence, thermal, magnetic and micromechanical sensor families.


Soft Matter for Biomedical Applications

Soft Matter for Biomedical Applications

Author: Dr Helena S Azevedo

Publisher: Royal Society of Chemistry

Published: 2021-06-11

Total Pages: 788

ISBN-13: 1788017579

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Dynamic soft materials that have the ability to expand and contract, change stiffness, self-heal or dissolve in response to environmental changes, are of great interest in applications ranging from biosensing and drug delivery to soft robotics and tissue engineering. This book covers the state-of-the-art and current trends in the very active and exciting field of bioinspired soft matter, its fundamentals and comprehension from the structural-property point of view, as well as materials and cutting-edge technologies that enable their design, fabrication, advanced characterization and underpin their biomedical applications. The book contents are supported by illustrated examples, schemes, and figures, offering a comprehensive and thorough overview of key aspects of soft matter. The book will provide a trusted resource for undergraduate and graduate students and will extensively benefit researchers and professionals working across the fields of chemistry, biochemistry, polymer chemistry, materials science and engineering, nanosciences, nanotechnologies, nanomedicine, biomedical engineering and medical sciences.


Molecular Biology of the Cell

Molecular Biology of the Cell

Author:

Publisher:

Published: 2002

Total Pages: 700

ISBN-13:

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MBC online publishes papers that describe and interpret results of original research conserning the molecular aspects of cell structure and function.