Functional Genomics of Extracellular Proteins of Phytophthora Infestans

Functional Genomics of Extracellular Proteins of Phytophthora Infestans

Author: Gertrude Ayerchoo Torto

Publisher:

Published: 2003

Total Pages:

ISBN-13:

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Abstract: Genomics offers new perspectives for the discovery of novel genes in the oomycetes, a unique group of eukaryotic microbes comprising saprophytes as well as pathogens of plants and animals. Among the oomycetes, the most devastating plant pathogen is the potato and tomato late blight pathogen Phytophthora infestans . Currently tens of thousands of expressed sequence tags (ESTs) are available for P. infestans . The challenge of the post-genomic era is to link a sequence to a phenotype (functional genomics) with as little experimental effort as possible. In the first study, we combined EST data mining with functional assays to identify extracellular effector proteins from P. infestans, which can manipulate plant molecular and cellular processes to induce defense or disease like responses. We developed the PexFinder algorithm for automated identification of Phytophthora extracellular proteins (Pex). Using a virus based high throughput functional assay to express Pex cDNAs in Nicotiana benthamiana and tomato, we identified two novel necrosis inducing effectors crn1 and crn2, which are members of large gene family. crn1 and crn2 were demonstrated to be expressed during P. infestans infection on tomato. In addition, crn2 induced defense related genes in tomato. In a second study, we characterized a Pex cDNA, pipg1 which represents the first endopolygalacturonase (endoPG) described from P. infestans . Generally, endopolygalacturonases are plant cell wall degrading enzymes primarily found and characterized extensively in plants and fungi. We showed that pipg1 is a member of a gene family and is expressed in both preinfection and infection stages. Phylogenetic analyses showed an affinity of pipg1 to fungal endoPGs, a feature that contrasts with phylogenies obtained with ribosomal sequences or compiled mitochondrial and chromosomal genes. In a third study, We generated ESTs from a cDNA library constructed from mRNA of Saprolegnia parasitica, an oomycete pathogen that causes saprolegniasis in fish. We performed preliminary comparisons of abundance of selected ESTs between S. parasitica and P. infestans and assessed the implications for S. parasitica . The long-term objective of this project is to develop genomic resources from diverse oomycete pathogens for comparative genomics.


Functional Characterization of Extracellular Protease Inhibitors of Phytophthora Infestans

Functional Characterization of Extracellular Protease Inhibitors of Phytophthora Infestans

Author: Miaoying Tian

Publisher:

Published: 2005

Total Pages:

ISBN-13:

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Abstract: The oomycetes form one of several lineages within the eukaryotes that independently evolved a parasitic lifestyle and are thought to have developed unique mechanisms of pathogenicity. The devastating oomycete plant pathogen Phytophthora infestans causes late blight, a ravaging disease of potato and tomato. Little is known about processes associated with P. infestans pathogenesis, particularly the suppression of host defense responses. We used data mining of P. infestans sequence databases to identify 18 extracellular protease inhibitors belonging to two major structural classes: (i) Kazal-like serine protease inhibitors (EPI1 to EPI14) and (ii) cystatin-like cysteine protease inhibitors (EPIC1 to EPIC4). A variety of molecular, biochemical and bioinformatic approaches were employed to functionally characterize these genes and investigate their roles in pathogen virulence. The 14 EPI proteins form a diverse family and appear to have evolved by domain shuffling, gene duplication, and diversifying selection to target a diverse array of serine proteases. Recombinant EPI1 and EPI10 proteins inhibited subtilisin A among major serine proteases, and inhibited and interacted with tomato P69B subtilase, a pathogenesis-related protein belonging to PR7 class. The recombinant cystatin-like cysteine protease inhibitor EPIC2B interacted with a novel tomato papain-like extracellular cysteine protease PIP1 with an implicated role in plant defense. PIP1 is closely related to Rcr3, an apoplastic cysteine protease required for tomato Cf-2 and Cladosporium fulvm Avr2-dependent defense response. Both EPIC1 and EPIC2B interacted with Rcr3. Interactions with plant defense-related proteases suggest a counterdefense role of these extracellular protease inhibitors. Interestingly, EPIC1 and EPIC2B were degraded by tomato pathogenesis-related P69B subtilase and EPI1 protected both proteins from degradation, indicating that EPI1 contributes to virulence by protecting pathogen proteins from degradation by defense-related proteases. In addition, our overall results suggest that complex cascades of inhibition of host proteases by diverse extracellular protease inhibitors of P. infestans might occur in the plant apoplast during infection, thus leading to multifaceted suppression of plant defense responses. Both Kazal-like and cystatin-like inhibitors are widespread in the oomycetes, but have not been reported in other microbial plant pathogens. Inhibition of host proteases by P. infestans protease inhibitors is proposed to be a novel mechanism of pathogen suppression of plant defense.


Genes Involved in Plant Defense

Genes Involved in Plant Defense

Author: Thomas Boller

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 368

ISBN-13: 3709166845

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Many fungi and bacteria that associate with plants are potentially harmful and can cause disease, while others enter into mutually beneficial sym bioses. Co-evolution of plants with pathogenic and symbiotic microbes has lead to refined mechanisms of reciprocal recognition, defense and counter defense. Genes in both partners determine and regulate these mechanisms. A detailed understanding of these genes provides basic biological insights as well as a starting point for developing novel methods of crop protection against pathogens. This volume deals with defense-related genes of plants and their regulation as well as with the genes of microbes involved in their interaction with plants. Our discussion begins at the level of populations and addresses the complex interaction of plant and microbial genes in multigenic disease resistance and its significance for crop protection as compared to mono genic resistance (Chap. 1). Although monogenic disease resistance may have its problems in the practice of crop protection, it is appealing to the experimentalist: in the so-called gene-for-gene systems, single genes in the plant and in the pathogen specify the compatibility or incompatibility of an interaction providing an ideal experimental system for studying events at the molecular level (Chaps. 2 and 4). Good progress has been made in identifying viral, bacterial, and fungal genes important in virulence and host range (Chaps. 3-6). An important aspect of plant-microbe interactions is the exchange of chemical signals. Microbes can respond to chemical signals of plant origin.


Phytophthora

Phytophthora

Author: Donald C. Erwin

Publisher:

Published: 1983

Total Pages: 412

ISBN-13:

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Biology of Phythophthora; Taxonomy of Phytophthora; Ecology of Phytophthora; Pathology of Phytophthora.


Oomycete Genetics and Genomics

Oomycete Genetics and Genomics

Author: Kurt Lamour

Publisher: John Wiley & Sons

Published: 2009-06-17

Total Pages: 602

ISBN-13: 0470475889

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This book brings together the knowledge from and tools for genetic and genomic research into oomycetes to help solve the problems this pathogen poses to crops and animals. Armed with the information presented here, researchers can use oomycete data to solve practical problems and gain insight into future areas of interest. Key Features: Offers an up-to-date coverage of research into oomycetes – which has advanced with biochemical and molecular analyses in recent years Helps researchers use oomycete data to solve practical problems, like damage to crop and animal resources Includes a section on interactions with animal hosts Offers perspective on future areas of research Assembles an international author base


The Handbook of Plant Functional Genomics

The Handbook of Plant Functional Genomics

Author: Guenter Kahl

Publisher: John Wiley & Sons

Published: 2008-09-08

Total Pages: 576

ISBN-13: 3527622551

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In this incisive, concise overview of this booming field, the editors -- two of the leading figures in the field with a proven track record -- combine their expertise to provide an invaluable reference on the topic. Following a treatment of transcriptome analysis, the book goes on to discuss replacement and mutation analysis, gene silencing and computational analysis. The whole is rounded off with a look at emerging technologies. Each chapter is accompanied by a concise overview, helping readers to quickly identify topics of interest, while important, carefully selected words and concepts are explained in a handy glossary. Equally accessible to both experienced scientists and newcomers to the field.


Plant Relationships Part B

Plant Relationships Part B

Author: George Carroll

Publisher: Springer

Published: 1997-08-06

Total Pages: 0

ISBN-13: 9783540620181

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Part A and Part B of the fifth of twelve volumes of The Mycota deal with the mechanisms of interactions between fungi and plants and consider pathogenic as well as mutualistic associations. Nobody involved in the manipulation of plant populations can afford to ignore the fungi, so pervasive and important are fungus/plant interactions for the well-being of plant communities, both managed and natural. Consequently, these volumes will be of interest to a broad range of professionals involved in agriculture, forestry, horticulture, and conservation as well as plant pathology, mycology, ecology, and evolution.


Comprehensive and Molecular Phytopathology

Comprehensive and Molecular Phytopathology

Author: Yuri Dyakov

Publisher: Elsevier

Published: 2007-01-09

Total Pages: 497

ISBN-13: 0080469337

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This book offers a collection of information on successive steps of molecular 'dialogue' between plants and pathogens. It additionally presents data that reflects intrinsic logic of plant-parasite interactions. New findings discussed include: host and non-host resistance, specific and nonspecific elicitors, elicitors and suppressors, and plant and animal immunity. This book enables the reader to understand how to promote or prevent disease development, and allows them to systematize their own ideas of plant-pathogen interactions.* Offers a more extensive scope of the problem as compared to other books in the market* Presents data to allow consideration of host-parasite relationships in dynamics and reveals interrelations between pathogenicity and resistance factors* Discusses beneficial plant-microbe interactions and practical aspects of molecular investigations of plant-parasite relationships* Compares historical study of common and specific features of plant immunity with animal immunity


Potato

Potato

Author: John Reader

Publisher: Yale University Press

Published: 2009-01-01

Total Pages: 332

ISBN-13: 0300153996

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The potato--humble, lumpy, bland, familiar--is a decidedly unglamorous staple of the dinner table. Or is it? John Reader's narrative on the role of the potato in world history suggests we may be underestimating this remarkable tuber. From domestication in Peru 8,000 years ago to its status today as the world's fourth largest food crop, the potato has played a starring--or at least supporting--role in many chapters of human history. In this witty and engaging book, Reader opens our eyes to the power of the potato. Whether embraced as the solution to hunger or wielded as a weapon of exploitation, blamed for famine and death or recognized for spurring progress, the potato has often changed the course of human events. Reader focuses on sixteenth-century South America, where the indigenous potato enabled Spanish conquerors to feed thousands of conscripted native people; eighteenth-century Europe, where the nutrition-packed potato brought about a population explosion; and today's global world, where the potato is an essential food source but also the world's most chemically-dependent crop. Where potatoes have been adopted as a staple food, social change has always followed. It may be "just" a humble vegetable, John Reader shows, yet the history of the potato has been anything but dull.