Deconstructing Complexity: Biophysical Characterization of Protein-Lipid Membranes
Author: Parkar
Publisher:
Published: 2024-06-15
Total Pages: 0
ISBN-13: 9783384262233
DOWNLOAD EBOOKRead and Download eBook Full
Author: Parkar
Publisher:
Published: 2024-06-15
Total Pages: 0
ISBN-13: 9783384262233
DOWNLOAD EBOOKAuthor: Martin Denis Caffrey
Publisher:
Published: 1982
Total Pages: 430
ISBN-13:
DOWNLOAD EBOOKAuthor: Eva Pebay-Peyroula
Publisher: John Wiley & Sons
Published: 2008-06-25
Total Pages: 368
ISBN-13: 3527621237
DOWNLOAD EBOOKMeeting the need for a book on developing and using new methods to investigate membrane proteins, this is the first of its kind to present the full range of novel techniques in one resource. Top researchers from around the world focus on the physical principles exploited in the different techniques, and provide examples of how these can bring about important new insights. Following an introduction, further sections discuss structural approaches, molecular interaction and large assemblies, dynamics and spectroscopies, finishing off with an exploration of structure-function relationships in whole cells.
Author: Mu-Ping Nieh
Publisher: Walter de Gruyter GmbH & Co KG
Published: 2019-07-22
Total Pages: 716
ISBN-13: 3110544687
DOWNLOAD EBOOKThe study of membranes has become of high importance in the fields of biology, pharmaceutical chemistry and medicine, since much of what happens in a cell or in a virus involves biological membranes. The current book is an excellent introduction to the area, which explains how modern analytical methods can be applied to study biological membranes and membrane proteins and the bioprocesses they are involved to.
Author:
Publisher: Elsevier
Published: 2024-07-21
Total Pages: 630
ISBN-13: 0443295670
DOWNLOAD EBOOKBiophysical Approaches for the Study of Membrane Structure, Part B, Volume 701 explores lipid membrane asymmetry and lateral heterogeneity. A burst of recent research has shown that bilayers whose leaflets differ in their physical properties—such as composition, phase state, or lateral stress—exhibit many fascinating new characteristics, but also pose a host of challenges related to their creation, characterization, simulation, and theoretical description. Chapters in this new release include Characterization of domain formation in complex membranes: Analyzing the bending modulus from simulations of complex membranes, The density-threshold affinity: Calculating lipid binding affinities from unbiased Coarse-Grain Molecular Dynamics simulations, and much more.Additional sections cover Uncertainty quantification for trans-membrane stresses and moments from simulation, Using molecular dynamics simulations to generate small-angle scattering curves and cryo-EM images of proteoliposomes, Binary Bilayer Simulations for Partitioning Within Membranes, Modeling Asymmetric Cell Membranes at All-atom Resolution, Multiscale remodeling of biomembranes and vesicles, Building complex membranes with Martini 3, Predicting lipid sorting in curved bilayer membranes, Simulating asymmetric membranes using P21 periodic boundary conditions, and many other interesting topics. - Explore the state-of-the-art of lipid membrane asymmetry - Covers experimental, theoretical, and computational techniques to create and characterize asymmetric lipid membranes - Teaches how these kinds of approaches create and characterize laterally inhomogeneous membranes
Author:
Publisher: Elsevier
Published: 2024-08-15
Total Pages: 628
ISBN-13: 0443295662
DOWNLOAD EBOOKBiophysical Approaches for the Study of Membrane Structure, Part B, Volume 701 explores lipid membrane asymmetry and lateral heterogeneity. A burst of recent research has shown that bilayers whose leaflets differ in their physical properties-such as composition, phase state, or lateral stress-exhibit many fascinating new characteristics, but also pose a host of challenges related to their creation, characterization, simulation, and theoretical description. Chapters in this new release include Characterization of domain formation in complex membranes: Analyzing the bending modulus from simulations of complex membranes, The density-threshold affinity: Calculating lipid binding affinities from unbiased Coarse-Grain Molecular Dynamics simulations, and much more. Additional sections cover Uncertainty quantification for trans-membrane stresses and moments from simulation, Using molecular dynamics simulations to generate small-angle scattering curves and cryo-EM images of proteoliposomes, Binary Bilayer Simulations for Partitioning Within Membranes, Modeling Asymmetric Cell Membranes at All-atom Resolution, Multiscale remodeling of biomembranes and vesicles, Building complex membranes with Martini 3, Predicting lipid sorting in curved bilayer membranes, Simulating asymmetric membranes using P21 periodic boundary conditions, and many other interesting topics.
Author: Sewwandi S. Rathnayake
Publisher:
Published: 2016
Total Pages: 218
ISBN-13:
DOWNLOAD EBOOKIn the past, lipid droplets were considered as inert cell organelles that store cellular energy in the form of neutral lipids. But today, they are known as cell organelles carrying out a myriad of functions required for the sustenance of life. The structure of intracellular lipid droplets closely resembles that of extracellular particles called lipoproteins. Both structures contain a core of neutral lipids surrounded by a monolayer of phospholipids and proteins. However, their functional roles within living organisms are different, ie, lipoprotein particles transport neutral lipids extracellularly in an organism's circulatory system, whereas lipid droplets store neutral lipids intracellularly. These two structures differ in composition as well. However, literature shows that proteins found on the surface of lipoproteins and lipid droplets share a high degree of sequence and structural similarity. Although structural and functional details of lipoproteins and their components have been widely studied in the past, many structural and functional aspects of lipid droplets and their protein components are still unclear. This work describes the lipid binding properties of two structurally homologous proteins carrying amphipathic alpha helix bundles, apoLp-III and perilipin 3 which are found across two different biological systems, namely, lipoproteins in insects and lipid droplets in humans. Both these proteins are exchangeable in their lipid binding behavior. Studying the lipid interactions of the above proteins is of key importance to understand the basics of neutral lipid metabolism and lipid transport of multicellular organisms. Large quantities of recombinant proteins required for our biophysical characterization studies were expressed in E. coli cells and purified using a combination of chromatography techniques. In order to study the lipid interactions of apoLp-III and perilipin 3, we used Langmuir monolayers composed of various types of phospholipids. Our monolayer work revealed that apoLp-III by itself is a surface active protein and it appears to show a preference for saturated and highly ordered lipids. Consistent with earlier work we find that insertion of apoLp-III into fluid lipid monolayers is highest for diacylglycerol. The effective molecular shape of lipid molecules and the head group charge were also identified as important parameters that affect the lipid binding of ApoLp-III. We also investigated the interaction of full length perilipin 3 and three of its N-terminal truncation mutants with lipid monolayers. We observed that similar to apoLp-III, perilipin 3 is a surface active protein. The C-terminus of perilipin 3 shows strong preference for insertion into saturated, hence more-ordered lipid environments, similar to our previous data on apoLp-III. The C-terminal alpha helix bundle domain of perilipin 3 showed significantly different insertion properties compared to that of the full length protein and the other successively longer N-terminal truncation mutants. Addition of N-terminal sequences to the C-terminal alpha helix bundle domain reduced the lipid insertion ability of perilipin 3. Anionic lipids with negative spontaneous curvature facilitate lipid interaction and insertion of perilipin 3. Lipid monolayers created on the surface of hydrophobic planer chips (HPA) were used to study the kinetics of lipid binding interactions of apoLp-III and perilipin 3 through surface plasmon resonance. Our data show that for both apoLp-III and perilipin 3, lipid association and dissociation occur in a two --step process, suggesting conformational changes of the amphipathic alpha helices upon lipid interaction. These results thus shed important new insight into the protein--lipid interactions of a model exchangeable apolipoprotein with significant implications for its mammalian counterparts.
Author: Ales Iglic
Publisher: Academic Press
Published: 2012-09-04
Total Pages: 358
ISBN-13: 0123965349
DOWNLOAD EBOOKAdvances in Planar Lipid Bilayers and Liposomes volumes cover a broad range of topics, including main arrangements of the reconstituted system, namely planar lipid bilayers as well as spherical liposomes. The invited authors present the latest results of their own research groups in this exciting multidisciplinary field. Incorporates contributions from newcomers and established and experienced researchers Explores the planar lipid bilayer systems and spherical liposomes from both theoretical and experimental perspectives Serves as an indispensable source of information for new scientists
Author: Bonnie Ann Wallace
Publisher: IOS Press
Published: 2009
Total Pages: 244
ISBN-13: 1607500000
DOWNLOAD EBOOKPresents an account of circular dichroism (CD) spectroscopy and its application to structural biology. This book covers the methods of synchrotron radiation circular dichroism (SRCD) and linear dichroism (LD).
Author: Sidney A. Simon
Publisher: Academic Press
Published: 2002-11-13
Total Pages: 606
ISBN-13: 0080925855
DOWNLOAD EBOOKThis volume contains a comprehensive overview of peptide-lipid interactions by leading researchers. The first part covers theoretical concepts, experimental considerations, and thermodynamics. The second part presents new results obtained through site-directed EPR, electron microscopy, NMR, isothermal calorimetry, and fluorescence quenching. The final part covers problems of biological interest, including signal transduction, membrane transport, fusion, and adhesion. Key Features * world-renowned experts * state-of-the-art experimental methods * monolayers, bilayers, biological membranes * theoretical aspects and computer simulations * rafts * synaptic transmission * membrane fusion * signal transduction