How to be a Quantitative Ecologist

How to be a Quantitative Ecologist

Author: Jason Matthiopoulos

Publisher: John Wiley & Sons

Published: 2011-04-12

Total Pages: 501

ISBN-13: 1119991722

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Ecological research is becoming increasingly quantitative, yet students often opt out of courses in mathematics and statistics, unwittingly limiting their ability to carry out research in the future. This textbook provides a practical introduction to quantitative ecology for students and practitioners who have realised that they need this opportunity. The text is addressed to readers who haven't used mathematics since school, who were perhaps more confused than enlightened by their undergraduate lectures in statistics and who have never used a computer for much more than word processing and data entry. From this starting point, it slowly but surely instils an understanding of mathematics, statistics and programming, sufficient for initiating research in ecology. The book’s practical value is enhanced by extensive use of biological examples and the computer language R for graphics, programming and data analysis. Key Features: Provides a complete introduction to mathematics statistics and computing for ecologists. Presents a wealth of ecological examples demonstrating the applied relevance of abstract mathematical concepts, showing how a little technique can go a long way in answering interesting ecological questions. Covers elementary topics, including the rules of algebra, logarithms, geometry, calculus, descriptive statistics, probability, hypothesis testing and linear regression. Explores more advanced topics including fractals, non-linear dynamical systems, likelihood and Bayesian estimation, generalised linear, mixed and additive models, and multivariate statistics. R boxes provide step-by-step recipes for implementing the graphical and numerical techniques outlined in each section. How to be a Quantitative Ecologist provides a comprehensive introduction to mathematics, statistics and computing and is the ideal textbook for late undergraduate and postgraduate courses in environmental biology. "With a book like this, there is no excuse for people to be afraid of maths, and to be ignorant of what it can do." —Professor Tim Benton, Faculty of Biological Sciences, University of Leeds, UK


A Course in Mathematical Biology

A Course in Mathematical Biology

Author: Gerda de Vries

Publisher: SIAM

Published: 2006-07-01

Total Pages: 307

ISBN-13: 0898718252

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This is the only book that teaches all aspects of modern mathematical modeling and that is specifically designed to introduce undergraduate students to problem solving in the context of biology. Included is an integrated package of theoretical modeling and analysis tools, computational modeling techniques, and parameter estimation and model validation methods, with a focus on integrating analytical and computational tools in the modeling of biological processes. Divided into three parts, it covers basic analytical modeling techniques; introduces computational tools used in the modeling of biological problems; and includes various problems from epidemiology, ecology, and physiology. All chapters include realistic biological examples, including many exercises related to biological questions. In addition, 25 open-ended research projects are provided, suitable for students. An accompanying Web site contains solutions and a tutorial for the implementation of the computational modeling techniques. Calculations can be done in modern computing languages such as Maple, Mathematica, and MATLAB?.


Ecological Statistics

Ecological Statistics

Author: Gordon A. Fox

Publisher: Oxford University Press

Published: 2015

Total Pages: 407

ISBN-13: 0199672547

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The application and interpretation of statistics are central to ecological study and practice. Ecologists are now asking more sophisticated questions than in the past. These new questions, together with the continued growth of computing power and the availability of new software, have created a new generation of statistical techniques. These have resulted in major recent developments in both our understanding and practice of ecological statistics. This novel book synthesizes a number of these changes, addressing key approaches and issues that tend to be overlooked in other books such as missing/censored data, correlation structure of data, heterogeneous data, and complex causal relationships. These issues characterize a large proportion of ecological data, but most ecologists' training in traditional statistics simply does not provide them with adequate preparation to handle the associated challenges. Uniquely, Ecological Statistics highlights the underlying links among many statistical approaches that attempt to tackle these issues. In particular, it gives readers an introduction to approaches to inference, likelihoods, generalized linear (mixed) models, spatially or phylogenetically-structured data, and data synthesis, with a strong emphasis on conceptual understanding and subsequent application to data analysis. Written by a team of practicing ecologists, mathematical explanations have been kept to the minimum necessary. This user-friendly textbook will be suitable for graduate students, researchers, and practitioners in the fields of ecology, evolution, environmental studies, and computational biology who are interested in updating their statistical tool kits. A companion web site provides example data sets and commented code in the R language.


Ecological Models and Data in R

Ecological Models and Data in R

Author: Benjamin M. Bolker

Publisher: Princeton University Press

Published: 2008-07-21

Total Pages: 408

ISBN-13: 0691125228

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Introduction and background; Exploratory data analysis and graphics; Deterministic functions for ecological modeling; Probability and stochastic distributions for ecological modeling; Stochatsic simulation and power analysis; Likelihood and all that; Optimization and all that; Likelihood examples; Standar statistics revisited; Modeling variance; Dynamic models.


A Biologist's Guide to Mathematical Modeling in Ecology and Evolution

A Biologist's Guide to Mathematical Modeling in Ecology and Evolution

Author: Sarah P. Otto

Publisher: Princeton University Press

Published: 2011-09-19

Total Pages: 745

ISBN-13: 1400840910

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Thirty years ago, biologists could get by with a rudimentary grasp of mathematics and modeling. Not so today. In seeking to answer fundamental questions about how biological systems function and change over time, the modern biologist is as likely to rely on sophisticated mathematical and computer-based models as traditional fieldwork. In this book, Sarah Otto and Troy Day provide biology students with the tools necessary to both interpret models and to build their own. The book starts at an elementary level of mathematical modeling, assuming that the reader has had high school mathematics and first-year calculus. Otto and Day then gradually build in depth and complexity, from classic models in ecology and evolution to more intricate class-structured and probabilistic models. The authors provide primers with instructive exercises to introduce readers to the more advanced subjects of linear algebra and probability theory. Through examples, they describe how models have been used to understand such topics as the spread of HIV, chaos, the age structure of a country, speciation, and extinction. Ecologists and evolutionary biologists today need enough mathematical training to be able to assess the power and limits of biological models and to develop theories and models themselves. This innovative book will be an indispensable guide to the world of mathematical models for the next generation of biologists. A how-to guide for developing new mathematical models in biology Provides step-by-step recipes for constructing and analyzing models Interesting biological applications Explores classical models in ecology and evolution Questions at the end of every chapter Primers cover important mathematical topics Exercises with answers Appendixes summarize useful rules Labs and advanced material available


Population Biology

Population Biology

Author: Alan Hastings

Publisher: Springer Science & Business Media

Published: 2013-03-14

Total Pages: 228

ISBN-13: 1475727313

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Population biology has been investigated quantitatively for many decades, resulting in a rich body of scientific literature. Ecologists often avoid this literature, put off by its apparently formidable mathematics. This textbook provides an introduction to the biology and ecology of populations by emphasizing the roles of simple mathematical models in explaining the growth and behavior of populations. The author only assumes acquaintance with elementary calculus, and provides tutorial explanations where needed to develop mathematical concepts. Examples, problems, extensive marginal notes and numerous graphs enhance the book's value to students in classes ranging from population biology and population ecology to mathematical biology and mathematical ecology. The book will also be useful as a supplement to introductory courses in ecology.


Introduction to Quantitative Ecology

Introduction to Quantitative Ecology

Author: Timothy E. Essington

Publisher: Oxford University Press

Published: 2021-09-30

Total Pages: 321

ISBN-13: 0192655442

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Environmental science (ecology, conservation, and resource management) is an increasingly quantitative field. A well-trained ecologist now needs to evaluate evidence generated from complex quantitative methods, and to apply these methods in their own research. Yet the existing books and academic coursework are not adequately serving most of the potential audience - instead they cater to the specialists who wish to focus on either mathematical or statistical aspects, and overwhelmingly appeal to those who already have confidence in their quantitative skills. At the same time, many texts lack an explicit emphasis on the epistemology of quantitative techniques. That is, how do we gain understanding about the real world from models that are so vastly simplified? This accessible textbook introduces quantitative ecology in a manner that aims to confront these limitations and thereby appeal to a far wider audience. It presents material in an informal, approachable, and encouraging manner that welcomes readers with any degree of confidence and prior training. It covers foundational topics in both mathematical and statistical ecology before describing how to implement these concepts to choose, use, and analyse models, providing guidance and worked examples in both spreadsheet format and R. The emphasis throughout is on the skilful interpretation of models to answer questions about the natural world. Introduction to Quantitative Ecology is suitable for advanced undergraduate students and incoming graduate students, seeking to strengthen their understanding of quantitative methods and to apply them successfully to real world ecology, conservation, and resource management scenarios.


Applied Mathematical Ecology

Applied Mathematical Ecology

Author: Simon A. Levin

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 498

ISBN-13: 3642613179

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The Second Autumn Course on Mathematical Ecology was held at the Intern ational Centre for Theoretical Physics in Trieste, Italy in November and December of 1986. During the four year period that had elapsed since the First Autumn Course on Mathematical Ecology, sufficient progress had been made in applied mathemat ical ecology to merit tilting the balance maintained between theoretical aspects and applications in the 1982 Course toward applications. The course format, while similar to that of the first Autumn Course on Mathematical Ecology, consequently focused upon applications of mathematical ecology. Current areas of application are almost as diverse as the spectrum covered by ecology. The topiys of this book reflect this diversity and were chosen because of perceived interest and utility to developing countries. Topical lectures began with foundational material mostly derived from Math ematical Ecology: An Introduction (a compilation of the lectures of the 1982 course published by Springer-Verlag in this series, Volume 17) and, when possible, progressed to the frontiers of research. In addition to the course lectures, workshops were arranged for small groups to supplement and enhance the learning experience. Other perspectives were provided through presentations by course participants and speakers at the associated Research Conference. Many of the research papers are in a companion volume, Mathematical Ecology: Proceedings Trieste 1986, published by World Scientific Press in 1988. This book is structured primarily by application area. Part II provides an introduction to mathematical and statistical applications in resource management.