Uncultivated Microorganisms

Uncultivated Microorganisms

Author: Slava S. Epstein

Publisher: Springer Science & Business Media

Published: 2009-09-01

Total Pages: 215

ISBN-13: 3540854657

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In 1898, an Austrian microbiologist Heinrich Winterberg made a curious observation: the number of microbial cells in his samples did not match the number of colonies formed on nutrient media (Winterberg 1898). About a decade later, J. Amann qu- tified this mismatch, which turned out to be surprisingly large, with non-growing cells outnumbering the cultivable ones almost 150 times (Amann 1911). These papers signify some of the earliest steps towards the discovery of an important phenomenon known today as the Great Plate Count Anomaly (Staley and Konopka 1985). Note how early in the history of microbiology these steps were taken. Detecting the Anomaly almost certainly required the Plate. If so, then the period from 1881 to 1887, the years when Robert Koch and Petri introduced their key inventions (Koch 1881; Petri 1887), sets the earliest boundary for the discovery, which is remarkably close to the 1898 observations by H. Winterberg. Celebrating its 111th anniversary, the Great Plate Count Anomaly today is arguably the oldest unresolved microbiological phenomenon. In the years to follow, the Anomaly was repeatedly confirmed by all microb- logists who cared to compare the cell count in the inoculum to the colony count in the Petri dish (cf., Cholodny 1929; Butkevich 1932; Butkevich and Butkevich 1936). By mid-century, the remarkable difference between the two counts became a universally recognized phenomenon, acknowledged by several classics of the time (Waksman and Hotchkiss 1937; ZoBell 1946; Jannasch and Jones 1959).


Accessing Uncultivated Microorganisms

Accessing Uncultivated Microorganisms

Author: Karsten Zengler

Publisher:

Published: 2008

Total Pages: 332

ISBN-13: 9781555814069

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Providing a comprehensive overview and discussing developments in the field, this book details various innovative methods used in microbial ecology and environmental microbiology. It also includes all aspects of microbial diversity from bacteria and fungi to protists.


The Chemistry of Microbiomes

The Chemistry of Microbiomes

Author: National Academies of Sciences, Engineering, and Medicine

Publisher: National Academies Press

Published: 2017-07-19

Total Pages: 133

ISBN-13: 0309458390

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The 21st century has witnessed a complete revolution in the understanding and description of bacteria in eco- systems and microbial assemblages, and how they are regulated by complex interactions among microbes, hosts, and environments. The human organism is no longer considered a monolithic assembly of tissues, but is instead a true ecosystem composed of human cells, bacteria, fungi, algae, and viruses. As such, humans are not unlike other complex ecosystems containing microbial assemblages observed in the marine and earth environments. They all share a basic functional principle: Chemical communication is the universal language that allows such groups to properly function together. These chemical networks regulate interactions like metabolic exchange, antibiosis and symbiosis, and communication. The National Academies of Sciences, Engineering, and Medicine's Chemical Sciences Roundtable organized a series of four seminars in the autumn of 2016 to explore the current advances, opportunities, and challenges toward unveiling this "chemical dark matter" and its role in the regulation and function of different ecosystems. The first three focused on specific ecosystemsâ€"earth, marine, and humanâ€"and the last on all microbiome systems. This publication summarizes the presentations and discussions from the seminars.


The Social Biology of Microbial Communities

The Social Biology of Microbial Communities

Author: Institute of Medicine

Publisher: National Academies Press

Published: 2013-01-10

Total Pages: 633

ISBN-13: 0309264324

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Beginning with the germ theory of disease in the 19th century and extending through most of the 20th century, microbes were believed to live their lives as solitary, unicellular, disease-causing organisms . This perception stemmed from the focus of most investigators on organisms that could be grown in the laboratory as cellular monocultures, often dispersed in liquid, and under ambient conditions of temperature, lighting, and humidity. Most such inquiries were designed to identify microbial pathogens by satisfying Koch's postulates.3 This pathogen-centric approach to the study of microorganisms produced a metaphorical "war" against these microbial invaders waged with antibiotic therapies, while simultaneously obscuring the dynamic relationships that exist among and between host organisms and their associated microorganisms-only a tiny fraction of which act as pathogens. Despite their obvious importance, very little is actually known about the processes and factors that influence the assembly, function, and stability of microbial communities. Gaining this knowledge will require a seismic shift away from the study of individual microbes in isolation to inquiries into the nature of diverse and often complex microbial communities, the forces that shape them, and their relationships with other communities and organisms, including their multicellular hosts. On March 6 and 7, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats hosted a public workshop to explore the emerging science of the "social biology" of microbial communities. Workshop presentations and discussions embraced a wide spectrum of topics, experimental systems, and theoretical perspectives representative of the current, multifaceted exploration of the microbial frontier. Participants discussed ecological, evolutionary, and genetic factors contributing to the assembly, function, and stability of microbial communities; how microbial communities adapt and respond to environmental stimuli; theoretical and experimental approaches to advance this nascent field; and potential applications of knowledge gained from the study of microbial communities for the improvement of human, animal, plant, and ecosystem health and toward a deeper understanding of microbial diversity and evolution. The Social Biology of Microbial Communities: Workshop Summary further explains the happenings of the workshop.


Size Limits of Very Small Microorganisms

Size Limits of Very Small Microorganisms

Author: National Research Council

Publisher: National Academies Press

Published: 1999-10-13

Total Pages: 171

ISBN-13: 0309066344

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How small can a free-living organism be? On the surface, this question is straightforward-in principle, the smallest cells can be identified and measured. But understanding what factors determine this lower limit, and addressing the host of other questions that follow on from this knowledge, require a fundamental understanding of the chemistry and ecology of cellular life. The recent report of evidence for life in a martian meteorite and the prospect of searching for biological signatures in intelligently chosen samples from Mars and elsewhere bring a new immediacy to such questions. How do we recognize the morphological or chemical remnants of life in rocks deposited 4 billion years ago on another planet? Are the empirical limits on cell size identified by observation on Earth applicable to life wherever it may occur, or is minimum size a function of the particular chemistry of an individual planetary surface? These questions formed the focus of a workshop on the size limits of very small organisms, organized by the Steering .Group for the Workshop on Size Limits of Very Small Microorganisms and held on October 22 and 23, 1998. Eighteen invited panelists, representing fields ranging from cell biology and molecular genetics to paleontology and mineralogy, joined with an almost equal number of other participants in a wide-ranging exploration of minimum cell size and the challenge of interpreting micro- and nano-scale features of sedimentary rocks found on Earth or elsewhere in the solar system. This document contains the proceedings of that workshop. It includes position papers presented by the individual panelists, arranged by panel, along with a summary, for each of the four sessions, of extensive roundtable discussions that involved the panelists as well as other workshop participants.


Environmental Genomics

Environmental Genomics

Author: C. Cristofre Martin

Publisher: Springer Science & Business Media

Published: 2008-01-18

Total Pages: 363

ISBN-13: 1588297772

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Here is a manual for an environmental scientist who wishes to embrace genomics to answer environmental questions. The volume covers: gene expression profiling, whole genome and chromosome mutation detection, and methods to assay genome diversity and polymorphisms within a particular environment. This book provides a systematic framework for determining environmental impact and ensuring human health and the sustainability of natural populations.


Microbiology

Microbiology

Author: Dave Wessner

Publisher: John Wiley & Sons

Published: 2022

Total Pages: 1027

ISBN-13: 1119701767

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Microbiology is a comprehensive textbook that facilitates a thorough understanding of the scope, nature, and complexity of the science of microscopic organisms. It gives a balanced presentation of foundational concepts, real-world applications, and current research and experimentation. The text approaches the subject within the context of exploration and experimentation, integrating a wealth of classroom-tested pedagogical features. The material is organized around the three pillars of physiology, ecology, and genetics -- helping students appreciate the interconnected and dynamic nature of microbiology and explore the relationship between different types of microbes, other organisms, and the environment. This international adaptation contains up-to-date coverage of topics including DNA replication and gene expression, viral pathogenesis, microbial biotechnology, adaptive immunity, the control of infectious diseases, and the microbiology of food and water. It also offers integrated coverage of SARS-CoV-2 and the impacts of COVID-19, relating it to the importance of an interdisciplinary response to a global pandemic. It also focuses on strengthening the organization of the content and updating the end of chapter problems


Endodontic Microbiology

Endodontic Microbiology

Author: Ashraf F. Fouad

Publisher: John Wiley & Sons

Published: 2009-04-13

Total Pages: 365

ISBN-13: 9780813807287

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Endodontic Microbiology is a major new work on the microbiology and clinical treatment of endodontic pathosis. Composed of contributions from the leading educators and researchers in the field, this authoritative text offers contemporary evidence and scholarship, bringing the science of endodontic microbiology to clinical practice. Endodontic Microbiology emphasizes the importance of the biological sciences to understanding endodontic disease and its effective management. The book thoroughly examines the expanding and evolving body of knowledge about endodontic microbiology. The topics covered include persistent and resistant microorganisms, virulence factors, and systemic dissemination of endodontic microorganisms. Written by preeminent experts, Endodontic Microbiology summarizes contemporary thought in the field.


Microbiology

Microbiology

Author: Dave Wessner

Publisher: John Wiley & Sons

Published: 2017-08-28

Total Pages: 962

ISBN-13: 1119444772

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Microbiology, 2nd Edition helps to develop a meaningful connection with the material through the incorporation of primary literature, applications and examples. The text offers an ideal balance between comprehensive, in-depth coverage of core concepts, while employing a narrative style that incorporates many relevant applications and a unique focus on current research and experimentation. The book frames information around the three pillars of physiology, ecology and genetics, which highlights their interconnectedness and helps students see a bigger picture. This innovative organization establishes a firm foundation for later work and provides a perspective on real-world applications of microbiology.


The Impact of Microorganisms on Consumption of Atmospheric Trace Gases

The Impact of Microorganisms on Consumption of Atmospheric Trace Gases

Author: Steffen Kolb

Publisher: Frontiers Media SA

Published: 2017-11-29

Total Pages: 203

ISBN-13: 288945326X

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Gases with a mixing ratio of less than one percent in the lower atmosphere (i.e. the troposphere) are considered as trace gases. Numerous of these trace gases originate from biological processes in marine and terrestrial ecosystems. These gases are of relevance for the climate as they contribute to global warming or to the troposphere’s chemical reactive system that builds the ozone layer or they impact on the stability of aerosols, greenhouse, and pollutant gases. These reactive trace gases include methane, a multitude of volatile organic compounds of biogenic origin (bVOCs) and inorganic gases such as nitrogen oxides or ozone. The regulatory function of microorganisms for trace gas cycling has been intensively studied for the greenhouse gases nitrous oxide and methane, but is less well understood for microorganisms that metabolize molecular hydrogen, carbon monoxide, or bVOCs. The studies compiled this Research Topic reflect this very well. While a number of articles focus on nitrous oxide and methane or carbon monoxide oxidation, only a few articles address conversion processes of further bVOCs. The Research Topic is complemented by three review articles about the consumption of methane and monoterpenes, as well as the role of the phyllosphere as a particular habitat for trace gas-consuming microorganisms, and point out future research directions in the field. The presented scientific work illustrates that the field of microbial regulation of trace glas fluxes is still in its infancy when one broadens the view on gases beyond methane and nitrous oxide. However, there is a societal need to better predict global dynamics of trace gases that impact on the functionality and warming of the troposphere. Upcoming modelling approaches will need further information on process rates, features and distribution of the driving microorganisms to fullfill this demanding task.