Genetics and Genomics of the Brassicaceae

Genetics and Genomics of the Brassicaceae

Author: Renate Schmidt

Publisher: Springer Science & Business Media

Published: 2010-12-03

Total Pages: 675

ISBN-13: 1441971181

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The Genetics and Genomics of the Brassicaceae provides a review of this important family (commonly termed the mustard family, or Cruciferae). The family contains several cultivated species, including radish, rocket, watercress, wasabi and horseradish, in addition to the vegetable and oil crops of the Brassica genus. There are numerous further species with great potential for exploitation in 21st century agriculture, particularly as sources of bioactive chemicals. These opportunities are reviewed, in the context of the Brassicaceae in agriculture. More detailed descriptions are provided of the genetics of the cultivated Brassica crops, including both the species producing most of the brassica vegetable crops (B. rapa and B. oleracea) and the principal species producing oilseed crops (B. napus and B. juncea). The Brassicaceae also include important “model” plant species. Most prominent is Arabidopsis thaliana, the first plant species to have its genome sequenced. Natural genetic variation is reviewed for A. thaliana, as are the genetics of the closely related A. lyrata and of the genus Capsella. Self incompatibility is widespread in the Brassicaceae, and this subject is reviewed. Interest arising from both the commercial value of crop species of the Brassicaceae and the importance of Arabidopsis thaliana as a model species, has led to the development of numerous resources to support research. These are reviewed, including germplasm and genomic library resources, and resources for reverse genetics, metabolomics, bioinformatics and transformation. Molecular studies of the genomes of species of the Brassicaceae revealed extensive genome duplication, indicative of multiple polyploidy events during evolution. In some species, such as Brassica napus, there is evidence of multiple rounds of polyploidy during its relatively recent evolution, thus the Brassicaceae represent an excellent model system for the study of the impacts of polyploidy and the subsequent process of diploidisation, whereby the genome stabilises. Sequence-level characterization of the genomes of Arabidopsis thaliana and Brassica rapa are presented, along with summaries of comparative studies conducted at both linkage map and sequence level, and analysis of the structural and functional evolution of resynthesised polyploids, along with a description of the phylogeny and karyotype evolution of the Brassicaceae. Finally, some perspectives of the editors are presented. These focus upon the Brassicaceae species as models for studying genome evolution following polyploidy, the impact of advances in genome sequencing technology, prospects for future transcriptome analysis and upcoming model systems.


Oil Crops

Oil Crops

Author: Johann Vollmann

Publisher: Springer Science & Business Media

Published: 2009-09-18

Total Pages: 557

ISBN-13: 0387775943

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When one is privileged to participate long enough in a professional capacity, certain trends may be observed in the dynamics of how challenges are met or how problems are solved. Agricultural research is no exception in view of how the plant sciences have moved forward in the past 30 years. For example, the once grand but now nearly forgotten art of whole plant physiology has given way almost completely to the more sophisticated realm of molecular biology. What once was the American Society of Plant Physiologists’ is now the American Society of Plant Molecular Biology; a democratic decision to indemnify efforts to go beyond the limits of the classical science and actually begin to understand the underlying biological basis for genetic regulation of metabolic mechanisms in plants. Yet, as new technologies open windows of light on the inner workings of biological processes, one might reminisce with faint nostalgia on days long past when the artisans of plant physiology, biochemistry, analytical chemistry and other scientific disciplines ebbed and waned in prominence. No intentional reference is made here regarding Darwinism; the plant sciences always have been extremely competitive. Technology is pivotal. Those who develop and/or implement innovative concepts typically are regarded as leaders in their respective fields. Each positive incremental step helps bring recognition and the impetus to push a scientific discipline forward with timely approaches to address relevant opportunities.


Biology of Brassica Coenospecies

Biology of Brassica Coenospecies

Author: C. Gomez-Campo

Publisher: Elsevier

Published: 1999-07-07

Total Pages: 501

ISBN-13: 0080528023

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Brassica crop species and their allies (Raphanus, Sinapis, Eruca, etc.) are important sources of edible roots, stems, leaves, buds and inflorescences, as well as of edible or industrial oils, condiments and forage. Many well known names of plants or plant products, such as kale, cabbage, brocolli, cauliflower, Brussels sprouts, kohl-rabi, Chinese cabbage, turnip, rape, rutabaga, swede, colza or rapeseed, canola, mustard, rocket, etc. are directly associated to this botanical group.The scientific interest for this botanical group has run parallel to its economical importance, and research achievements in our days would have certainly appeared unimaginable only two decades ago. As the end of the millenium approaches, entirely new fields (transformation, somatic fusion, etc.) have been added to the classical ones. Thus, nobody can doubt the opportuneness of this book, which combines and presents both the basic and applied biological aspects of the Brassica species.


The Brassica napus Genome

The Brassica napus Genome

Author: Shengyi Liu

Publisher: Springer

Published: 2018-10-22

Total Pages: 295

ISBN-13: 3319436945

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This book describes how the genome sequence contributes to our understanding of allopolyploidisation and the genome evolution, genetic diversity, complex trait regulation and knowledge-based breeding of this important crop. Numerous examples demonstrate how widespread homoeologous genome rearrangements and exchanges have moulded structural genome diversity following a severe polyploidy bottleneck. The allopolyploid crop species Brassica napus has the most highly duplicated plant genome to be assembled to date, with the largest number of annotated genes. Examples are provided for use of the genome sequence to identify and capture diversity for important agronomic traits, including seed quality and disease resistance. The increased potential for detailed gene discovery using high-density genetic mapping, quantitative genetics and transcriptomic analyses is described in the context of genome availability and illustrated with recent examples. Intimate knowledge of the highly-duplicated gene space, on the one hand, and the repeat landscape on the other, particularly in comparison to the two diploid progenitor genomes, provide a fundamental basis for new insights into the regulatory mechanisms that are coupled with selection for polyploid success and crop evolution.


Sustainable strategies for managing Brassica napus (oilseed rape) resistance to Leptosphaeria maculans (phoma stem canker)

Sustainable strategies for managing Brassica napus (oilseed rape) resistance to Leptosphaeria maculans (phoma stem canker)

Author: B.D.L. Fitt

Publisher: Springer Science & Business Media

Published: 2006-01-24

Total Pages: 140

ISBN-13: 9781402045240

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Control of phoma stem canker in oil rapeseed crops typically depends on cultivars resistant to L. Maculans, the virus that causes it. Recently, virus populations have overcome resistance, causing serious canker outbreaks in Australia and Europe. There is an urgent need to find sources of resistance to L. maculans. This book synthesizes studies in management of resistance genes control L. maculans, and will stimulate further research on this important model system.


Gene Prediction

Gene Prediction

Author: Martin Kollmar

Publisher: Humana Press

Published: 2019-05-19

Total Pages: 284

ISBN-13: 9781493991723

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This volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use-cases, and explain ways to simplify re-annotation of long available genome assemblies. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary computational requirements, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Gene Prediction: Methods and Protocols is a valuable resource for researchers and research groups working on the assembly and annotation of single species or small groups of species. Chapter 3 is available open access under a CC BY 4.0 license via link.springer.com.


Sulphur in Plants

Sulphur in Plants

Author: Y.P. Abrol

Publisher: Springer Science & Business Media

Published: 2013-06-29

Total Pages: 424

ISBN-13: 9401702896

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Sulphur (S) plays a pivotal role in various plant growth and development processes being a constituent of sulphur-containing amino acids, cysteine and methionine, and other metabolites viz., glutathione and phytochelatins, co-factor of enzymes which contribute to stress repair and amelioration of heavy metal toxicity. Besides, a number of S-containing components are biologically active and, thus, a source for use as medicinal value. The basic global issue before the agricultural scientist and world community is to evolve cultivars and develop methodologies for efficient use of inputs to enhance agricultural productivity. This is particularly true of the developing countries which are going to see maximum rise in population with changing food demands and declining availability of land. Amongst the inputs, nutrients play a crucial role. The major requirement is for N, P and K followed by several micro-nutrients. In this context reports of world-wide S deficiency in the agricultural systems are relevant. The reasons are many. Broadly speaking reduction inS emission, use of S-free N, P and K fertilizers and higher biomass production contributed the maximum. Despite the need for sulphur as an essential plant nutrient and the substantial returns expected from its use, very little attention has been given to fill the gap between supply and demand of S.


Molecular Genetics, Genomics and Biotechnology of Crop Plants Breeding

Molecular Genetics, Genomics and Biotechnology of Crop Plants Breeding

Author: Søren K. Rasmussen

Publisher: MDPI

Published: 2020-05-27

Total Pages: 238

ISBN-13: 3039288776

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This Special Issue on molecular genetics, genomics, and biotechnology in crop plant breeding seeks to encourage the use of the tools currently available. It features nine research papers that address quality traits, grain yield, and mutations by exploring cytoplasmic male sterility, the delicate control of flowering in rice, the removal of anti-nutritional factors, the use and development of new technologies for non-model species marker technology, site-directed mutagenesis and GMO regulation, genomics selection and genome-wide association studies, how to cope with abiotic stress, and an exploration of fruit trees adapted to harsh environments for breeding purposes. A further four papers review the genetics of pre-harvest spouting, readiness for climate-smart crop development, genomic selection in the breeding of cereal crops, and the large numbers of mutants in straw lignin biosynthesis and deposition.


Plant Breeding Reviews, Volume 44

Plant Breeding Reviews, Volume 44

Author:

Publisher: John Wiley & Sons

Published: 2020-11-10

Total Pages: 336

ISBN-13: 1119716950

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Plant Breeding Reviews presents state-of-the-art reviews on plant genetics and the breeding of all types of crops by both traditional means and molecular methods. Many of the crops widely grown today stem from a very narrow genetic base; understanding and preserving crop genetic resources is vital to the security of food systems worldwide. The emphasis of the series is on methodology, a fundamental understanding of crop genetics, and applications to major crops.


Polyploid and Hybrid Genomics

Polyploid and Hybrid Genomics

Author: Z. Jeffrey Chen

Publisher: John Wiley & Sons

Published: 2013-04-05

Total Pages: 646

ISBN-13: 1118552849

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Polyploidy plays an important role in biological diversity, trait improvement, and plant species survival. Understanding the evolutionary phenomenon of polyploidy is a key challenge for plant and crop scientists. This book is made up of contributions from leading researchers in the field from around the world, providing a truly global review of the subject. Providing broad-ranging coverage, and up-to-date information from some of the world’s leading researchers, this book is an invaluable resource for geneticists, plant and crop scientists, and evolutionary biologists.