Statistical Physics of Sparse and Dense Models in Optimization and Inference

Statistical Physics of Sparse and Dense Models in Optimization and Inference

Author: Hinnerk Christian Schmidt

Publisher:

Published: 2018

Total Pages: 0

ISBN-13:

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Datasets come in a variety of forms and from a broad range of different applications. Typically, the observed data is noisy or in some other way subject to randomness. The recent developments in machine learning have revived the need for exact theoretical limits of probabilistic methods that recover information from noisy data. In this thesis we are concerned with the following two questions: what is the asymptotically best achievable performance? And how can this performance be achieved, i.e., what is the optimal algorithmic strategy? The answer depends on the properties of the data. The problems in this thesis can all be represented as probabilistic graphical models. The generative process of the data determines the structure of the underlying graphical model. The structures considered here are either sparse random graphs or dense (fully connected) models. The above questions can be studied in a probabilistic framework, which leads to an average (or typical) case answer. Such a probabilistic formulation is natural to statistical physics and leads to a formal analogy with problems in disordered systems. In turn, this permits to harvest the methods developed in the study of disordered systems, to attack constraint satisfaction and statistical inference problems. The formal analogy can be exploited as follows. The optimal performance analysis is directly related to the structure of the extrema of the macroscopic free energy. The algorithmic aspects follow from the minimization of the microscopic free energy (that is, the Bethe free energy in this work) which is closely related to message passing algorithms. This thesis is divided into four contributions. First, a statistical physics investigation of the circular coloring problem is carried out that reveals several distinct features. Second, new rigorous upper bounds on the size of minimal contagious sets in random graphs, with bounded maximum degree, are obtained. Third, the phase diagram of the dense Dawid-Skene model is derived by mapping the problem onto low-rank matrix factorization. The associated approximate message passing algorithm is evaluated on real-world data. Finally, the Bayes optimal denoising mean square error is derived for a restricted class of extensive rank matrix estimation problems.


Statistical Physics, Optimization, Inference, and Message-Passing Algorithms

Statistical Physics, Optimization, Inference, and Message-Passing Algorithms

Author: Florent Krzakala

Publisher: Oxford University Press

Published: 2016

Total Pages: 319

ISBN-13: 0198743734

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In the last decade, there have been an increasing convergence of interest and methods between theoretical physics and fields as diverse as probability, machine learning, optimization and compressed sensing. In particular, many theoretical and applied works in statistical physics and computer science have relied on the use of message passing algorithms and their connection to statistical physics of spin glasses. The aim of this book, especially adapted to PhD students, post-docs, and young researchers, is to present the background necessary for entering this fast developing field.


Statistical Physics, Optimization, Inference, and Message-Passing Algorithms

Statistical Physics, Optimization, Inference, and Message-Passing Algorithms

Author: Florent Krzakala

Publisher: Oxford University Press

Published: 2015-12-17

Total Pages: 319

ISBN-13: 0191061425

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In the last decade, there have been an increasing convergence of interest and methods between theoretical physics and fields as diverse as probability, machine learning, optimization and compressed sensing. In particular, many theoretical and applied works in statistical physics and computer science have relied on the use of message passing algorithms and their connection to statistical physics of spin glasses. The aim of this book, especially adapted to PhD students, post-docs, and young researchers, is to present the background necessary for entering this fast developing field.


Quantum Statistical Inference for Density Estimation

Quantum Statistical Inference for Density Estimation

Author:

Publisher:

Published: 1993

Total Pages: 10

ISBN-13:

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A new penalized likelihood method for non-parametric density estimation is proposed, which is based on a mathematical analogy to quantum statistical physics. The mathematical procedure for density estimation is related to maximum entropy methods for inverse problems; the penalty function is a convex information divergence enforcing global smoothing toward default models, positivity, extensivity and normalization. The novel feature is the replacement of classical entropy by quantum entropy, so that local smoothing may be enforced by constraints on the expectation values of differential operators. Although the hyperparameters, covariance, and linear response to perturbations can be estimated by a variety of statistical methods, we develop the Bayesian interpretation. The linear response of the MAP estimate is proportional to the covariance. The hyperparameters are estimated by type-II maximum likelihood. The method is demonstrated on standard data sets.


Statistical Learning with Sparsity

Statistical Learning with Sparsity

Author: Trevor Hastie

Publisher: CRC Press

Published: 2015-05-07

Total Pages: 354

ISBN-13: 1498712177

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Discover New Methods for Dealing with High-Dimensional DataA sparse statistical model has only a small number of nonzero parameters or weights; therefore, it is much easier to estimate and interpret than a dense model. Statistical Learning with Sparsity: The Lasso and Generalizations presents methods that exploit sparsity to help recover the underl


Statistical Physics of Spin Glasses and Information Processing

Statistical Physics of Spin Glasses and Information Processing

Author: Hidetoshi Nishimori

Publisher: Clarendon Press

Published: 2001

Total Pages: 264

ISBN-13: 9780198509400

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This superb new book is one of the first publications in recent years to provide a broad overview of this interdisciplinary field. Most of the book is written in a self contained manner, assuming only a general knowledge of statistical mechanics and basic probabilty theory . It provides the reader with a sound introduction to the field and to the analytical techniques necessary to follow its most recent developments


Modeling the 3D Conformation of Genomes

Modeling the 3D Conformation of Genomes

Author: Guido Tiana

Publisher: CRC Press

Published: 2019-01-15

Total Pages: 370

ISBN-13: 1351387006

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This book provides a timely summary of physical modeling approaches applied to biological datasets that describe conformational properties of chromosomes in the cell nucleus. Chapters explain how to convert raw experimental data into 3D conformations, and how to use models to better understand biophysical mechanisms that control chromosome conformation. The coverage ranges from introductory chapters to modeling aspects related to polymer physics, and data-driven models for genomic domains, the entire human genome, epigenome folding, chromosome structure and dynamics, and predicting 3D genome structure.