Matlab® in Bioscience and Biotechnology

Matlab® in Bioscience and Biotechnology

Author: Leonid Burstein

Publisher: Elsevier

Published: 2011-06-05

Total Pages: 251

ISBN-13: 1908818034

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MATLAB® in bioscience and biotechnology presents an introductory Matlab course oriented towards various collaborative areas of biotechnology and bioscience. It concentrates on Matlab fundamentals and gives examples of its application to a wide range of current bioengineering problems in computational biology, molecular biology, bio-kinetics, biomedicine, bioinformatics, and biotechnology. In the last decade Matlab has been presented to students as the first computer program they learn. Consequently, many non-programmer students, engineers and scientists have come to regard it as user-friendly and highly convenient in solving their specific problems. Numerous books are available on programming in Matlab for engineers in general, irrespective of their specialization, or for those specializing in some specific area, but none have been designed especially for such a wide, interdisciplinary, and topical area as bioengineering. Thus, in this book, Matlab is presented with examples and applications to various school-level and advanced bioengineering problems - from growing populations of microorganisms and population dynamics, reaction kinetics and reagent concentrations, predator-prey models, mass-transfer and flow problems, to sequence analysis and sequence statistics. - This is the first book intended as a manual introducing biologists and other biotechnology engineers to work with Matlab - It is suitable for beginners and inexperienced users; however, applications of Matlab to advanced problems such as the Monte Carlo method, curve fitting, and reliable machine diagnostics make the book relevant to university teachers as well - The book is different in that it assumes a modest mathematical background for the reader and introduces the mathematical or technical concepts with a somewhat traditional approach; Matlab is then used as a tool for subsequent computer solution


Computational Nanotechnology

Computational Nanotechnology

Author: Sarhan M. Musa

Publisher: CRC Press

Published: 2018-09-03

Total Pages: 540

ISBN-13: 1351833456

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Applications of nanotechnology continue to fuel significant innovations in areas ranging from electronics, microcomputing, and biotechnology to medicine, consumer supplies, aerospace, and energy production. As progress in nanoscale science and engineering leads to the continued development of advanced materials and new devices, improved methods of modeling and simulation are required to achieve a more robust quantitative understanding of matter at the nanoscale. Computational Nanotechnology: Modeling and Applications with MATLAB® provides expert insights into current and emerging methods, opportunities, and challenges associated with the computational techniques involved in nanoscale research. Written by, and for, those working in the interdisciplinary fields that comprise nanotechnology—including engineering, physics, chemistry, biology, and medicine—this book covers a broad spectrum of technical information, research ideas, and practical knowledge. It presents an introduction to computational methods in nanotechnology, including a closer look at the theory and modeling of two important nanoscale systems: molecular magnets and semiconductor quantum dots. Topics covered include: Modeling of nanoparticles and complex nano and MEMS systems Theory associated with micromagnetics Surface modeling of thin films Computational techniques used to validate hypotheses that may not be accessible through traditional experimentation Simulation methods for various nanotubes and modeling of carbon nanotube and silicon nanowire transistors In regard to applications of computational nanotechnology in biology, contributors describe tracking of nanoscale structures in cells, effects of various forces on cellular behavior, and use of protein-coated gold nanoparticles to better understand protein-associated nanomaterials. Emphasizing the importance of MATLAB for biological simulations in nanomedicine, this wide-ranging survey of computational nanotechnology concludes by discussing future directions in the field, highlighting the importance of the algorithms, modeling software, and computational tools in the development of efficient nanoscale systems.


Essential Mathematics And Softwares For Biological Sciences

Essential Mathematics And Softwares For Biological Sciences

Author: Dr. JANARDHAN KADARI

Publisher: Shashwat Publication

Published: 2023-06-07

Total Pages: 237

ISBN-13: 8119281101

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Mathematical and statistical concepts are applied to cellular and molecular biology, genetics, population genetics, quantitative blochemistry, nucleic acid chemistry, microbiology, biotechnology. medicine, pharmacy, numerical taxonomy, ecology and evolution.The Coalescing of genetics, mathematics, Computers has resulted in the emergence of bioinformatics. We talk of next generationn DNA sequencing and micro array. R was created by "Rossihaka and Robert Gentleman" at university of Auckland (New Zealand) currently developed by R development core team


Optimization in Practice with MATLAB

Optimization in Practice with MATLAB

Author: Achille Messac

Publisher: Cambridge University Press

Published: 2015-03-19

Total Pages: 503

ISBN-13: 1107109183

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This textbook is designed for students and industry practitioners for a first course in optimization integrating MATLAB® software.


Foundations of Theoretical Approaches in Systems Biology

Foundations of Theoretical Approaches in Systems Biology

Author: Alberto Marin-Sanguino

Publisher: Frontiers Media SA

Published: 2019-01-11

Total Pages: 216

ISBN-13: 2889456838

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If biology in the 20th century was characterized by an explosion of new technologies and experimental methods, that of the 21st has seen an equally exuberant proliferation of mathematical and computational methods that attempt to systematize and explain the abundance of available data. As we live through the consolidation of a new paradigm where experimental data goes hand in hand with computational analysis, we contemplate the challenge of fusing these two aspects of the new biology into a consistent theoretical framework. Whether systems biology will survive as a field or be washed away by the tides of future fads will ultimately depend on its success to achieve this type of synthesis. The famous quote attributed to Kurt Lewin comes to mind: "there is nothing more practical than a good theory". This book presents a wide assortment of articles on systems biology in an attempt to capture the variety of current methods in systems biology and show how they can help to find answers to the challenges of modern biology.


Mathematica®: A Problem-Centered Approach

Mathematica®: A Problem-Centered Approach

Author: Roozbeh Hazrat

Publisher: Springer

Published: 2016-01-04

Total Pages: 337

ISBN-13: 3319275852

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This textbook introduces the vast array of features and powerful mathematical functions of Mathematica using a multitude of clearly presented examples and worked-out problems. Each section starts with a description of a new topic and some basic examples. The author then demonstrates the use of new commands through three categories of problems - the first category highlights those essential parts of the text that demonstrate the use of new commands in Mathematica whilst solving each problem presented; - the second comprises problems that further demonstrate the use of commands previously introduced to tackle different situations; and - the third presents more challenging problems for further study. The intention is to enable the reader to learn from the codes, thus avoiding long and exhausting explanations. While based on a computer algebra course taught to undergraduate students of mathematics, science, engineering and finance, the book also includes chapters on calculus and solving equations, and graphics, thus covering all the basic topics in Mathematica. With its strong focus upon programming and problem solving, and an emphasis on using numerical problems that do not need any particular background in mathematics, this book is also ideal for self-study and as an introduction to researchers who wish to use Mathematica as a computational tool. This new edition has been extensively revised and updated, and includes new chapters with problems and worked examples.


NMR-Based Metabolomics

NMR-Based Metabolomics

Author: G. A. Nagana Gowda

Publisher: Humana

Published: 2020-08-29

Total Pages: 489

ISBN-13: 9781493996926

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This book provides broad coverage of nuclear magnetic resonance (NMR) spectroscopy-based methods and applications for the analysis of metabolites in a wide range of biological samples, from biofluids, cells, animal models, human, to plants and foods. The applications range from mechanistic understanding, biomarker discovery, environmental studies, and drug discovery to nutrition, while NMR methods include global, targeted, and isotope tracer-based techniques. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, NMR-Based Metabolomics: Methods and Protocols serves as a wealth of information for beginners as well as advanced practitioners and also as stepping stones for further advances in the field of metabolomics.


Process Modelling and Simulation

Process Modelling and Simulation

Author: César de Prada

Publisher: MDPI

Published: 2019-09-23

Total Pages: 298

ISBN-13: 3039214551

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Since process models are nowadays ubiquitous in many applications, the challenges and alternatives related to their development, validation, and efficient use have become more apparent. In addition, the massive amounts of both offline and online data available today open the door for new applications and solutions. However, transforming data into useful models and information in the context of the process industry or of bio-systems requires specific approaches and considerations such as new modelling methodologies incorporating the complex, stochastic, hybrid and distributed nature of many processes in particular. The same can be said about the tools and software environments used to describe, code, and solve such models for their further exploitation. Going well beyond mere simulation tools, these advanced tools offer a software suite built around the models, facilitating tasks such as experiment design, parameter estimation, model initialization, validation, analysis, size reduction, discretization, optimization, distributed computation, co-simulation, etc. This Special Issue collects novel developments in these topics in order to address the challenges brought by the use of models in their different facets, and to reflect state of the art developments in methods, tools and industrial applications.


R Programming for Bioinformatics

R Programming for Bioinformatics

Author: Robert Gentleman

Publisher: CRC Press

Published: 2008-07-14

Total Pages: 328

ISBN-13: 1420063685

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Due to its data handling and modeling capabilities as well as its flexibility, R is becoming the most widely used software in bioinformatics. R Programming for Bioinformatics explores the programming skills needed to use this software tool for the solution of bioinformatics and computational biology problems.Drawing on the author's first-hand exper


Flowing Matter

Flowing Matter

Author: Federico Toschi

Publisher: Springer Nature

Published: 2019-09-25

Total Pages: 313

ISBN-13: 3030233707

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This open access book, published in the Soft and Biological Matter series, presents an introduction to selected research topics in the broad field of flowing matter, including the dynamics of fluids with a complex internal structure -from nematic fluids to soft glasses- as well as active matter and turbulent phenomena. Flowing matter is a subject at the crossroads between physics, mathematics, chemistry, engineering, biology and earth sciences, and relies on a multidisciplinary approach to describe the emergence of the macroscopic behaviours in a system from the coordinated dynamics of its microscopic constituents. Depending on the microscopic interactions, an assembly of molecules or of mesoscopic particles can flow like a simple Newtonian fluid, deform elastically like a solid or behave in a complex manner. When the internal constituents are active, as for biological entities, one generally observes complex large-scale collective motions. Phenomenology is further complicated by the invariable tendency of fluids to display chaos at the large scales or when stirred strongly enough. This volume presents several research topics that address these phenomena encompassing the traditional micro-, meso-, and macro-scales descriptions, and contributes to our understanding of the fundamentals of flowing matter. This book is the legacy of the COST Action MP1305 “Flowing Matter”.