Mathematical Models of Chemical Reactions
Author: Péter Érdi
Publisher: Manchester University Press
Published: 1989
Total Pages: 296
ISBN-13: 9780719022081
DOWNLOAD EBOOKPosts
Reaction Kinetics
Author: János Tóth
Publisher:
Published: 2018
Total Pages: 469
ISBN-13: 9781493986422
DOWNLOAD EBOOKFifty years ago, a new approach to reaction kinetics began to emerge: one based on mathematical models of reaction kinetics, or formal reaction kinetics. Since then, there has been a rapid and accelerated development in both deterministic and stochastic kinetics, primarily because mathematicians studying differential equations and algebraic geometry have taken an interest in the nonlinear differential equations of kinetics, which are relatively simple, yet capable of depicting complex behavior such as oscillation, chaos, and pattern formation. The development of stochastic models was triggered by the fact that novel methods made it possible to measure molecules individually. Now it is high time to make the results of the last half-century available to a larger audience: students of chemistry, chemical engineering and biochemistry, not to mention applied mathematics. Based on recent papers, this book presents the most important concepts and results, together with a wealth of solved exercises. The book is accompanied by the authors' Mathematica package, ReactionKinetics, which helps both students and scholars in their everyday work, and which can be downloaded from http://extras.springer.com/ and also from the authors' websites. Further, the large set of unsolved problems provided may serve as a springboard for individual research.
Deterministic Versus Stochastic Modelling in Biochemistry and Systems Biology
Author: Paola Lecca
Publisher: Elsevier
Published: 2013-04-09
Total Pages: 411
ISBN-13: 1908818212
DOWNLOAD EBOOKStochastic kinetic methods are currently considered to be the most realistic and elegant means of representing and simulating the dynamics of biochemical and biological networks. Deterministic versus stochastic modelling in biochemistry and systems biology introduces and critically reviews the deterministic and stochastic foundations of biochemical kinetics, covering applied stochastic process theory for application in the field of modelling and simulation of biological processes at the molecular scale. Following an overview of deterministic chemical kinetics and the stochastic approach to biochemical kinetics, the book goes onto discuss the specifics of stochastic simulation algorithms, modelling in systems biology and the structure of biochemical models. Later chapters cover reaction-diffusion systems, and provide an analysis of the Kinfer and BlenX software systems. The final chapter looks at simulation of ecodynamics and food web dynamics. Introduces mathematical concepts and formalisms of deterministic and stochastic modelling through clear and simple examples Presents recently developed discrete stochastic formalisms for modelling biological systems and processes Describes and applies stochastic simulation algorithms to implement a stochastic formulation of biochemical and biological kinetics
Stochastic Chemical Kinetics
Author: Péter Érdi
Publisher: Springer
Published: 2014-05-06
Total Pages: 174
ISBN-13: 149390387X
DOWNLOAD EBOOKThis volume reviews the theory and simulation methods of stochastic kinetics by integrating historical and recent perspectives, presents applications, mostly in the context of systems biology and also in combustion theory. In recent years, due to the development in experimental techniques, such as optical imaging, single cell analysis, and fluorescence spectroscopy, biochemical kinetic data inside single living cells have increasingly been available. The emergence of systems biology brought renaissance in the application of stochastic kinetic methods.
Mathematical Modelling
Author: Simon Serovajsky
Publisher: CRC Press
Published: 2021-11-24
Total Pages: 589
ISBN-13: 1000503984
DOWNLOAD EBOOKMathematical Modelling sets out the general principles of mathematical modelling as a means comprehending the world. Within the book, the problems of physics, engineering, chemistry, biology, medicine, economics, ecology, sociology, psychology, political science, etc. are all considered through this uniform lens. The author describes different classes of models, including lumped and distributed parameter systems, deterministic and stochastic models, continuous and discrete models, static and dynamical systems, and more. From a mathematical point of view, the considered models can be understood as equations and systems of equations of different nature and variational principles. In addition to this, mathematical features of mathematical models, applied control and optimization problems based on mathematical models, and identification of mathematical models are also presented. Features Each chapter includes four levels: a lecture (main chapter material), an appendix (additional information), notes (explanations, technical calculations, literature review) and tasks for independent work; this is suitable for undergraduates and graduate students and does not require the reader to take any prerequisite course, but may be useful for researchers as well Described mathematical models are grouped both by areas of application and by the types of obtained mathematical problems, which contributes to both the breadth of coverage of the material and the depth of its understanding Can be used as the main textbook on a mathematical modelling course, and is also recommended for special courses on mathematical models for physics, chemistry, biology, economics, etc.
Mathematical Methods in Contemporary Chemistry
Author: Kuchanov
Publisher: CRC Press
Published: 1996-03-20
Total Pages: 622
ISBN-13: 9782884491259
DOWNLOAD EBOOKReaction Kinetics: Exercises, Programs and Theorems
Author: János Tóth
Publisher: Springer
Published: 2018-09-18
Total Pages: 476
ISBN-13: 1493986430
DOWNLOAD EBOOKFifty years ago, a new approach to reaction kinetics began to emerge: one based on mathematical models of reaction kinetics, or formal reaction kinetics. Since then, there has been a rapid and accelerated development in both deterministic and stochastic kinetics, primarily because mathematicians studying differential equations and algebraic geometry have taken an interest in the nonlinear differential equations of kinetics, which are relatively simple, yet capable of depicting complex behavior such as oscillation, chaos, and pattern formation. The development of stochastic models was triggered by the fact that novel methods made it possible to measure molecules individually. Now it is high time to make the results of the last half-century available to a larger audience: students of chemistry, chemical engineering and biochemistry, not to mention applied mathematics. Based on recent papers, this book presents the most important concepts and results, together with a wealth of solved exercises. The book is accompanied by the authors’ Mathematica package, ReactionKinetics, which helps both students and scholars in their everyday work, and which can be downloaded from http://extras.springer.com/ and also from the authors’ websites. Further, the large set of unsolved problems provided may serve as a springboard for individual research.
Stochastic Modelling of Reaction–Diffusion Processes
Author: Radek Erban
Publisher: Cambridge University Press
Published: 2020-01-30
Total Pages: 322
ISBN-13: 1108572995
DOWNLOAD EBOOKThis practical introduction to stochastic reaction-diffusion modelling is based on courses taught at the University of Oxford. The authors discuss the essence of mathematical methods which appear (under different names) in a number of interdisciplinary scientific fields bridging mathematics and computations with biology and chemistry. The book can be used both for self-study and as a supporting text for advanced undergraduate or beginning graduate-level courses in applied mathematics. New mathematical approaches are explained using simple examples of biological models, which range in size from simulations of small biomolecules to groups of animals. The book starts with stochastic modelling of chemical reactions, introducing stochastic simulation algorithms and mathematical methods for analysis of stochastic models. Different stochastic spatio-temporal models are then studied, including models of diffusion and stochastic reaction-diffusion modelling. The methods covered include molecular dynamics, Brownian dynamics, velocity jump processes and compartment-based (lattice-based) models.
Foundations of Chemical Reaction Network Theory
Author: Martin Feinberg
Publisher: Springer
Published: 2019-01-31
Total Pages: 475
ISBN-13: 3030038580
DOWNLOAD EBOOKThis book provides an authoritative introduction to the rapidly growing field of chemical reaction network theory. In particular, the book presents deep and surprising theorems that relate the graphical and algebraic structure of a reaction network to qualitative properties of the intricate system of nonlinear differential equations that the network induces. Over the course of three main parts, Feinberg provides a gradual transition from a tutorial on the basics of reaction network theory, to a survey of some of its principal theorems, and, finally, to a discussion of the theory’s more technical aspects. Written with great clarity, this book will be of value to mathematicians and to mathematically-inclined biologists, chemists, physicists, and engineers who want to contribute to chemical reaction network theory or make use of its powerful results.
An Introduction to Stochastic Modeling
Author: Howard M. Taylor
Publisher: Academic Press
Published: 2014-05-10
Total Pages: 410
ISBN-13: 1483269272
DOWNLOAD EBOOKAn Introduction to Stochastic Modeling provides information pertinent to the standard concepts and methods of stochastic modeling. This book presents the rich diversity of applications of stochastic processes in the sciences. Organized into nine chapters, this book begins with an overview of diverse types of stochastic models, which predicts a set of possible outcomes weighed by their likelihoods or probabilities. This text then provides exercises in the applications of simple stochastic analysis to appropriate problems. Other chapters consider the study of general functions of independent, identically distributed, nonnegative random variables representing the successive intervals between renewals. This book discusses as well the numerous examples of Markov branching processes that arise naturally in various scientific disciplines. The final chapter deals with queueing models, which aid the design process by predicting system performance. This book is a valuable resource for students of engineering and management science. Engineers will also find this book useful.
