Multi-omics and Computational Biology in Horticultural Plants: From Genotype to Phenotype, Volume II

Multi-omics and Computational Biology in Horticultural Plants: From Genotype to Phenotype, Volume II

Author: Yunpeng Cao

Publisher: Frontiers Media SA

Published: 2024-02-13

Total Pages: 353

ISBN-13: 2832544703

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This Research Topic is part of the article collection series - Multi-omics and Computational Biology in Horticultural Plants: From Genotype to Phenotype. Horticultural plants play an important role for humans by providing herbal medicines, beverages, vegetables, fruits, and ornamentals. High-throughput technologies have revolutionised the time scale and power of detecting insights into physiological changes and biological mechanisms in plants. All sequencing data and tools have helped us better understand the evolutionary histories of horticultural plants and provide genotype and phenotype resources for molecular studies on economically important traits. The integration of these -omics technologies (e.g., genomics, transcriptomics, proteomics, metabolomics, lipidomics, ionomics, and redoxomics) is currently at the forefront of plant research. The genomes of horticultural plants are highly diverse and complex, often with a high degree of heterozygosity and polyploidy. Novel computational methods need to be developed to take advantage of state-of-the-art genomic technologies. As a result, the mining of multi-omics data and the development of new computational biology approaches for the reliable and efficient analysis of plant traits is necessary.


Genomics of Cereal Crops

Genomics of Cereal Crops

Author: Shabir Hussain Wani

Publisher: Springer Nature

Published: 2022-06-13

Total Pages: 366

ISBN-13: 1071625330

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This volume details different genomic methods and resources to explore cereal genomics. Chapters guide readers through crop genomes, Next Generation Sequencing (NGS) technologies, protocol for CRISPR editing, transgenic wheat, NGS approach, virus induced gene silencing (VIGS), genomic tools, computational prediction of ncRNAs (miRNAs & ceRNAs) in cereal crops, genotyping-by-sequencing (GBS), Bayesian method, single cell sequencing, genome-wide association study (GWAS), QTL interval mapping, whole genome bisulfite sequencing, genome imprinting, and methods for study the receptor-metabolite interaction. Authoritative and cutting-edge, Genomics of Cereal Crops aims to be a useful and practical guide to new researchers and experts looking to expand their knowledge.


Omics in Horticultural Crops

Omics in Horticultural Crops

Author: Gyana Ranjan Rout

Publisher: Academic Press

Published: 2022-07-16

Total Pages: 664

ISBN-13: 0323899137

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Omics in Horticulture Crops presents a comprehensive view of germplasm diversity, genetic evolution, genomics, proteomics and transcriptomics of fruit crops (temperate, tropical and subtropical fruits, fruit nuts, berries), vegetables, tuberous crops, ornamental and floricultural crops and medicinal aromatic plants. Information covering phenomics, genetic diversity, phylogenetic studies, genome sequencing, and genome barcoding through the utilization of molecular markers plays an imperative role in the characterization and effective utilization of diverse germplasm are included in the book. This is a valuable reference for researchers and academics seeking to improve cultivar productivity through enhanced genetic diversity while also retaining optimal traits and protecting the growing environment. - Highlights perspectives, progress and promises of -omics application - Provides a systematic overview of origin, progenitor and domestication process as well as genetic insights - Includes full range of horticultural crops


PlantOmics: The Omics of Plant Science

PlantOmics: The Omics of Plant Science

Author: Debmalya Barh

Publisher: Springer

Published: 2015-03-18

Total Pages: 839

ISBN-13: 8132221729

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PlantOmics: The Omics of Plant Science provides a comprehensive account of the latest trends and developments of omics technologies or approaches and their applications in plant science. Thirty chapters written by 90 experts from 15 countries are included in this state-of-the-art book. Each chapter describes one topic/omics such as: omics in model plants, spectroscopy for plants, next generation sequencing, functional genomics, cyto-metagenomics, epigenomics, miRNAomics, proteomics, metabolomics, glycomics, lipidomics, secretomics, phenomics, cytomics, physiomics, signalomics, thiolomics, organelle omics, micro morphomics, microbiomics, cryobionomics, nanotechnology, pharmacogenomics, and computational systems biology for plants. It provides up to date information, technologies, and their applications that can be adopted and applied easily for deeper understanding plant biology and therefore will be helpful in developing the strategy for generating cost-effective superior plants for various purposes. In the last chapter, the editors have proposed several new areas in plant omics that may be explored in order to develop an integrated meta-omics strategy to ensure the world and earth’s health and related issues. This book will be a valuable resource to students and researchers in the field of cutting-edge plant omics.


Plant Growth Regulators

Plant Growth Regulators

Author: Tariq Aftab

Publisher: Springer Nature

Published: 2021-03-25

Total Pages: 504

ISBN-13: 3030611531

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Agriculture faces many challenges to fulfil the growing demand for sustainable food production and ensure high-quality nutrition for a rapidly growing population. To guarantee adequate food production, it is necessary to increase the yield per area of arable land. A method for achieving this goal has been the application of growth regulators to modulate plant growth. Plant growth regulators (PGRs) are substances in specific formulations which, when applied to plants or seeds, have the capacity to promote, inhibit, or modify physiological traits, development and/or stress responses. They maintain proper balance between source and sink for enhancing crop yield. PGRs are used to maximize productivity and quality, improve consistency in production, and overcome genetic and abiotic limitations to plant productivity. Suitable PGRs include hormones such as cytokinins and auxins, and hormone-like compounds such as mepiquat chloride and paclobutrazol. The use of PGRs in mainstream agriculture has steadily increased within the last 20 years as their benefits have become better understood by growers. Unfortunately, the growth of the PGR market may be constrained by a lack of innovation at a time when an increase in demand for new products will require steady innovation and discovery of novel, cost-competitive, specific, and effective PGRs. A plant bio-stimulant is any substance or microorganism applied to plants with the aim to enhance nutrition efficiency, abiotic stress tolerance and/or crop quality traits, regardless of its nutrients content. Apart from traditional PGRs, which are mostly plant hormones, there are a number of substances/molecules such as nitric oxide, methyl jasmonate, brassinosteroids, seaweed extracts, strigolactones, plant growth promoting rhizobacteria etc. which act as PGRs. These novel PGRs or bio-stimulants have been reported to play important roles in stress responses and adaptation. They can protect plants against various stresses, including water deficit, chilling and high temperatures, salinity and flooding. This book includes chapters ranging from sensing and signalling in plants to translational research. In addition, the cross-talk operative in plants in response to varied signals of biotic and abiotic nature is also presented. Ultimately the objective of this book is to present the current scenario and the future plan of action for the management of stresses through traditional as well as novel PGRs. We believe that this book will initiate and introduce readers to state-of-the-art developments and trends in this field of study.


Plant Signaling Molecules

Plant Signaling Molecules

Author: M. Iqbal R. Khan

Publisher: Woodhead Publishing

Published: 2019-03-15

Total Pages: 597

ISBN-13: 0128164522

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Plant Signaling Molecule: Role and Regulation under Stressful Environments explores tolerance mechanisms mediated by signaling molecules in plants for achieving sustainability under changing environmental conditions. Including a wide range of potential molecules, from primary to secondary metabolites, the book presents the status and future prospects of the role and regulation of signaling molecules at physiological, biochemical, molecular and structural level under abiotic stress tolerance. This book is designed to enhance the mechanistic understanding of signaling molecules and will be an important resource for plant biologists in developing stress tolerant crops to achieve sustainability under changing environmental conditions. - Focuses on plant biology under stress conditions - Provides a compendium of knowledge related to plant adaptation, physiology, biochemistry and molecular responses - Identifies treatments that enhance plant tolerance to abiotic stresses - Illustrates specific physiological pathways that are considered key points for plant adaptation or tolerance to abiotic stresses


Plant Metabolomics

Plant Metabolomics

Author: Kazuki Saito

Publisher: Springer Science & Business Media

Published: 2006-06-29

Total Pages: 351

ISBN-13: 3540297820

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Metabolomics – which deals with all metabolites of an organism – is a rapidly-emerging sector of post-genome research fields. It plays significant roles in a variety of fields from medicine to agriculture and holds a fundamental position in functional genomics studies and their application in plant biotechnology. This volume comprehensively covers plant metabolomics for the first time. The chapters offer cutting-edge information on analytical technology, bioinformatics and applications. They were all written by leading researchers who have been directly involved in plant metabolomics research throughout the world. Up-to-date information and future developments are described, thereby producing a volume which is a landmark of plant metabolomics research and a beneficial guideline to graduate students and researchers in academia, industry, and technology transfer organizations in all plant science fields.


Postharvest Physiology and Biochemistry of Fruits and Vegetables

Postharvest Physiology and Biochemistry of Fruits and Vegetables

Author: Elhadi M. Yahia

Publisher: Woodhead Publishing

Published: 2018-10-31

Total Pages: 494

ISBN-13: 0128132795

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Postharvest Physiology and Biochemistry of Fruits and Vegetables presents an updated, interrelated and sequenced view of the contribution of fruits and vegetables on human health, their aspects of plant metabolism, physical and chemical/compositional changes during the entire fruit development lifecycle, the physiological disorders and biochemical effects of modified/controlled atmospheres, and the biotechnology of horticultural crops. The book is written specifically for those interested in preharvest and postharvest crop science and the impact of physiological and biochemical changes on their roles as functional foods. - Deals with the developmental aspects of the lifecycle in whole fruits - Describes issues, such as the morphology and anatomy of fruits, beginning with the structural organization of the whole plant and explaining the fruit structure and its botanical classification - Addresses biotechnological concepts that control firmness, quality and the nutritional value of fruits