Development of the Regenerative Glycosylation Approach for Manual and Automated Oligosaccharide Synthesis

Development of the Regenerative Glycosylation Approach for Manual and Automated Oligosaccharide Synthesis

Author: Swati Sudhir Nigudkar

Publisher:

Published: 2014

Total Pages: 251

ISBN-13:

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It has been recognized that carbohydrates are involved in all phases of life beginning with the embryonic development and cell growth. However, it is the involvement of carbohydrates in the progression of various deadly diseases that gave these natural compounds significant roles in diagnostics and as pharmaceuticals. Although carbohydrates are highly desirable to the biological and medical communities, these molecules are still very challenging targets for chemists. Functionalization, derivatization, controlling anomeric stereoselectivity, purification, and characterization are all existing experimental hurdles towards producing synthetic carbohydrates in large quantities and high purity. Advances in chemistry and biochemistry have certainly facilitated the synthesis and purification of carbohydrates. However, the development of practical and general methods for chemical glycosylation and expeditious oligosaccharide synthesis remain an important and challenging area of research. This topic has also become the basis for this doctoral dissertation wherein the focus was primarily placed on the development of new leaving groups for chemical glycosylation and designing novel methods and technologies for efficient oligosaccharide synthesis. One outcome of this study is the development of two new classes of building blocks for chemical glycosylation, O-benzoxazolyl (OBox) and 3,3-difluoro-3H-indol-2-yl (OFox) imidates. Based on our observation that the OFox leaving group has the same structure before its introduction and after its departure, 3,3-difluoroxindole (HOFox) aglycone, we developed a new regenerative concept for chemical glycosylation. This method allows for performing glycosylation reactions in a conceptually novel way using catalytic amounts of reagents and activators. Further application of the regenerative concept to the HPLC-assisted synthesis on polymer support, an automated technology being developed in our laboratory, was complementary for refining all chemical aspects of both methods.


Handbook of Chemical Glycosylation

Handbook of Chemical Glycosylation

Author: Alexei V. Demchenko

Publisher: John Wiley & Sons

Published: 2008-04-09

Total Pages: 524

ISBN-13: 3527621652

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Since carbohydrate oligomers are still a challenge in synthetic chemistry, this book on recent developments fulfils a great need. Covering the chemistry necessary to synthesize exact copies of these structures, top authors from all around the world comprehensively deal with synthesis from anomeric halides, from miscellaneous glycosyl donors, and by indirect and special methods, as well as 1-oxygen-and 1-sulfur-substituted derivatives. They demonstrate the best approach for the stereoselective formation of the intermonomeric bond, making this essential reading for every biochemist working in biosynthesis, the exploration of biopathways and vaccines.


Glycochemical Synthesis

Glycochemical Synthesis

Author: Shang-Cheng Hung

Publisher: John Wiley & Sons

Published: 2016-09-12

Total Pages: 578

ISBN-13: 1119006279

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This book is a comprehensive and concise review on principles, strategies, and crucial advances in glycochemistry. It focuses on synthesis and practical applications and emphasizes state-of-the-art approaches to the assembly and design of sugars. • Provides detailed discussion on specific topics like oligosaccharide assembly and design of sugars, techniques in glycoconjugate preparation, multivalency, and carbohydrate-based drug design • Uses notable examples, like solution-based one-pot methods and automated methods for sugar assembly, to illustrate important concepts and advances in a rapidly emerging field • Discusses practical applications of carbohydrates, like medicine, therapeutics, drug and vaccine development


Selective Glycosylations

Selective Glycosylations

Author: Clay S. Bennett

Publisher: John Wiley & Sons

Published: 2017-01-25

Total Pages: 398

ISBN-13: 3527696229

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A comprehensive summary of novel approaches to the stereoselective construction of glycosidic linkages, covering modern glycosylation methods and their use and application in natural product synthesis and drug discovery. Clearly divided into five sections, the first describes recent advances in classical methodologies in carbohydrate chemistry, while the second goes on to deal with newer chemistries developed to control selectivity in glycosylation reactions. Section three is devoted to selective glycosylation reactions that rely on the use of catalytic promoters. Section four describes modern approaches for controlling regioselectivity in carbohydrate synthesis. The final section focuses on new developments in the construction of "unusual" sugars and is rounded off by a presentation of modern procedures for the construction of glycosylated natural products. By providing the latest advances in glycosylation as well as information on mechanistic aspects of the reaction, this is an invaluable reference for both specialists and beginners in this booming interdisciplinary field that includes carbohydrate chemistry, organic synthesis, catalysis, and biochemistry.


Development of New Strategies for Expeditious Oligosaccharide Synthesis

Development of New Strategies for Expeditious Oligosaccharide Synthesis

Author: Sophon Kaeothip

Publisher:

Published: 2010

Total Pages: 231

ISBN-13:

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The important role that carbohydrates play in biology and medicine has been the major incentive for devising new methods for chemical and enzymatic glycosylation. The chemical approach to oligosaccharides involves multiple synthetic steps and the development of new strategies that allow for streamlining the synthesis of these complex biomolecules is a significant area of research. The aim of this doctoral dissertation is to develop new reagents and efficient methodologies for oligosaccharide synthesis. It was found that siver(I) tetrafluoroborate can be used as a powerful activator of various glycosyl donors for oligosaccharide synthesis. This study evolved into the development of a very effective orthogonal strategy which allowed for the synthesis of a variety of oligosaccharide sequences with moderate stereoselectivity. Further studies showed that the improvement of stereoselectivity of glycosylation can be achieved in two different modes. First, we found that electron withdrawing protecting groups on the glycosyl acceptor can help to obtain excellent alpha-stereoselectivity. Second, the stereoselectivity of glycosidation of thioglycosides in the presence of bromine depends greatly on the anomeric orientation of the leaving group. The mechanistic studies of this phenomenon were conducted using high field NMR and the developed methodology was applied to the synthesis of a range of therapeutically attractive carbohydrate-amino acid conjugates.


Solid Support Oligosaccharide Synthesis and Combinatorial Carbohydrate Libraries

Solid Support Oligosaccharide Synthesis and Combinatorial Carbohydrate Libraries

Author: Peter H. Seeberger

Publisher: John Wiley & Sons

Published: 2004-04-07

Total Pages: 321

ISBN-13: 0471460729

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Solid-phase synthesis of carbohydrates presents unique challenges to synthetic chemists and currently represents one of the hottest areas of research in bioorganic chemistry. Solid Support Oligosaccharide Synthesis and Combinatorial Carbohydrate Libraries addresses the exciting expectation that solid-phase assembly of oligosaccharides will have a fundamental impact on the field of glycobiology. This publication details the methodologies currently investigated for the attachment of carbohydrates to beads, synthesis including coupling strategies, and removal of the product from beads. With chapters written by eminent contributing authors, the material explores different synthetic strategies, glycosylation protocols, the use of solid supports versus soluble polymeric supports, and "on-resin" analytical methods. Tremendous progress in the field has set the stage for Solid Support Oligosaccharide Synthesis and Combinatorial Carbohydrate Libraries to provide a wealth of information on such topics as: Specific oligosaccharide structures used in signal transduction processes Preparation and screening of glycopeptide libraries Solid-phase carbohydrate synthesis


Automated Synthesis of the Lewis Blood Group Oligosaccharides

Automated Synthesis of the Lewis Blood Group Oligosaccharides

Author: Kerry Routenberg Love

Publisher:

Published: 2004

Total Pages: 323

ISBN-13:

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Cell-surface carbohydrates are markers of specific cell types. These oligosaccharides are involved in recognition, adhesion, and signal transduction events. Advances in molecular glycobiology rely heavily on straightforward access to structurally defined oligosaccharides, but traditional syntheses of complex carbohydrates have been very laborious. Development of a novel linker and monitoring of each glycosylation reaction during automated solid-phase oligosaccharide synthesis allowed for the rapid synthesis of three Lewis-type cell surface oligosaccharides. The assembly of the nonasaccharide adenocarcinoma marker Le[superscript]y-Le[superscript]x monosaccharide building blocks was achieved in just 23 hours, while the syntheses of the tumor markers Lewis X, a pentasaccharide, and Lewis Y, a hexasaccharide, required only 12 and 14 hours respectively. The automation of carbohydrate synthesis greatly accelerates access to molecules for biological study and vaccine development.


Glycoscience

Glycoscience

Author: Joachim Thiem

Publisher: Springer Science & Business Media

Published: 1997

Total Pages: 264

ISBN-13: 9783540620334

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Annotation This book presents the state of the art in the synthesis very complex saccharide structures, written by leading scientists at the forefront of this rapidly growing field. Reflecting the particular significance in recent years of efficient and selective procedures employing enzymes for preparative purposes in the carbohydrate field, a major proportion of the articles focus on these biocatalytic methods. In addition, recent strategies for the construction of unusual carbohydrates structures employing novel and creative methodologies are highlighted. Further, particular emphasis is placed on very complex saccharide structures as well as on special solutions to problems that are particularly challenging.