Biology in the Grid

Biology in the Grid

Author: Phillip Thurtle

Publisher: U of Minnesota Press

Published: 2018-10-19

Total Pages: 308

ISBN-13: 1452957797

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How grids paved the way for our biological understanding of organisms As one of the most visual sciences, biology has an aesthetic dimension that lends force and persuasion to scientific arguments: how things are arranged on a page, how texts are interspersed with images, and how images are composed reflect deep-seated beliefs about how life exists on Earth. Biology in the Grid traces how our current understanding of life and genetics emerged from the pervasive nineteenth- and twentieth-century graphic form of the grid, which allowed disparate pieces of information to form what media theorist Vilém Flusser called “technical images.” Phillip Thurtle explains how the grid came to dominate biology in the twentieth century, transforming biologists’ beliefs about how organisms were constructed. He demonstrates how this shift in our understanding of biological grids enabled new philosophies in endeavors such as advertising, entertainment, and even political theory. The implications of the arguments in Biology in the Grid are profound, touching on matters as fundamental as desire, our understanding of our bodies, and our view of how society is composed. Moreover, Thurtle’s beautifully written, tightly focused arguments allow readers to apply his claims to new disciplines and systems. Bristling with insight and potential, Biology in the Grid ultimately suggests that such a grid-organized understanding of natural life inevitably has social and political dimensions, with society recognized as being made of interchangeable, regulated parts rather than as an organic whole.


Grid Computing in Life Science

Grid Computing in Life Science

Author: Akihiko Konagaya

Publisher: Springer Science & Business Media

Published: 2005-03-07

Total Pages: 198

ISBN-13: 3540252088

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This book constitutes the thoroughly refereed postproceedings of the First International Life Science Grid Workshop, LSGRID 2004, held in Kanazawa, Japan in May/ June 2004. The 10 revised full papers and 5 invited papers presented were carefully selected and went through two rounds of reviewing and revision. Among the topics addressed are grid environment for bioinformatics, grid architectures, database federation, proteome annotation, grid workflow software, functional genome annotation, protein classification, tree inference, parallel computing, high performance computing, grid infrastructures, functional genomics, and evolutionary algorithms.


Parallel Computing for Bioinformatics and Computational Biology

Parallel Computing for Bioinformatics and Computational Biology

Author: Albert Y. Zomaya

Publisher: John Wiley & Sons

Published: 2006-04-21

Total Pages: 817

ISBN-13: 0471718483

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Discover how to streamline complex bioinformatics applications with parallel computing This publication enables readers to handle more complex bioinformatics applications and larger and richer data sets. As the editor clearly shows, using powerful parallel computing tools can lead to significant breakthroughs in deciphering genomes, understanding genetic disease, designing customized drug therapies, and understanding evolution. A broad range of bioinformatics applications is covered with demonstrations on how each one can be parallelized to improve performance and gain faster rates of computation. Current parallel computing techniques and technologies are examined, including distributed computing and grid computing. Readers are provided with a mixture of algorithms, experiments, and simulations that provide not only qualitative but also quantitative insights into the dynamic field of bioinformatics. Parallel Computing for Bioinformatics and Computational Biology is a contributed work that serves as a repository of case studies, collectively demonstrating how parallel computing streamlines difficult problems in bioinformatics and produces better results. Each of the chapters is authored by an established expert in the field and carefully edited to ensure a consistent approach and high standard throughout the publication. The work is organized into five parts: * Algorithms and models * Sequence analysis and microarrays * Phylogenetics * Protein folding * Platforms and enabling technologies Researchers, educators, and students in the field of bioinformatics will discover how high-performance computing can enable them to handle more complex data sets, gain deeper insights, and make new discoveries.


Single-Cell-Based Models in Biology and Medicine

Single-Cell-Based Models in Biology and Medicine

Author: Alexander Anderson

Publisher: Springer Science & Business Media

Published: 2007-08-08

Total Pages: 346

ISBN-13: 376438123X

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Aimed at postgraduate students in a variety of biology-related disciplines, this volume presents a collection of mathematical and computational single-cell-based models and their application. The main sections cover four general model groupings: hybrid cellular automata, cellular potts, lattice-free cells, and viscoelastic cells. Each section is introduced by a discussion of the applicability of the particular modelling approach and its advantages and disadvantages, which will make the book suitable for students starting research in mathematical biology as well as scientists modelling multicellular processes.


Advances in Protein Molecular and Structural Biology Methods

Advances in Protein Molecular and Structural Biology Methods

Author: Timir Tripathi

Publisher: Academic Press

Published: 2022-01-14

Total Pages: 716

ISBN-13: 0323902650

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Advances in Protein Molecular and Structural Biology Methods offers a complete overview of the latest tools and methods applicable to the study of proteins at the molecular and structural level. The book begins with sections exploring tools to optimize recombinant protein expression and biophysical techniques such as fluorescence spectroscopy, NMR, mass spectrometry, cryo-electron microscopy, and X-ray crystallography. It then moves towards computational approaches, considering structural bioinformatics, molecular dynamics simulations, and deep machine learning technologies. The book also covers methods applied to intrinsically disordered proteins (IDPs)followed by chapters on protein interaction networks, protein function, and protein design and engineering. It provides researchers with an extensive toolkit of methods and techniques to draw from when conducting their own experimental work, taking them from foundational concepts to practical application. - Presents a thorough overview of the latest and emerging methods and technologies for protein study - Explores biophysical techniques, including nuclear magnetic resonance, X-ray crystallography, and cryo-electron microscopy - Includes computational and machine learning methods - Features a section dedicated to tools and techniques specific to studying intrinsically disordered proteins


Encyclopedia of Bioinformatics and Computational Biology

Encyclopedia of Bioinformatics and Computational Biology

Author:

Publisher: Elsevier

Published: 2018-08-21

Total Pages: 3421

ISBN-13: 0128114320

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Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, Three Volume Set combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases


Transactions on Computational Systems Biology X

Transactions on Computational Systems Biology X

Author: Corrado Priami

Publisher: Springer Science & Business Media

Published: 2008-12-18

Total Pages: 204

ISBN-13: 3540922725

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Technology is taking us to a world where myriads of heavily networked devices interact with the physical world in multiple ways, and at many levels, from the globalInternetdowntomicroandnanodevices. Manyofthesedevicesarehighly mobile and autonomous and must adapt to the surrounding environment in a totally unsupervised way. A fundamental research challenge is the design of robust decentralized c- puting systemsthat arecapableofoperating in changing environmentsandwith noisy input, and yet exhibit the desired behavior and response time, under c- straints such as energy consumption, size, and processing power. These systems should be able to adapt and learn how to react to unforeseen scenarios as well as to display properties comparable to social entities. The observation of nature has brought us many great and unforeseen concepts. Biological systems are able to handle many of these challenges with an elegance and e?ciency far beyond currenthumanartifacts. Basedonthisobservation,bio-inspiredapproacheshave been proposed as a means of handling the complexity of such systems. The goal is to obtain methods to engineer technical systems, which are of a stability and e?ciency comparable to those found in biological entities. This Special Issue on Biological and Biologically-inspired Communication contains the best papers from the Second International Conference on Bio- Inspired Models of Network, Information, and Computing Systems (BIONET- ICS 2007). The BIONETICS conference aims to bring together researchers and scientistsfromseveraldisciplines incomputerscienceandengineeringwhereb- inspired methods are investigated, as well as from bioinformatics, to deepen the information exchange and collaboration among the di?erent communities.


Tools, Techniques and Assessment in Biology

Tools, Techniques and Assessment in Biology

Author: John Adds

Publisher: Nelson Thornes

Published: 1999

Total Pages: 164

ISBN-13: 9780174482734

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Nelson Advanced Science Biology is a complete series of lively, high quality, affordable student books for senior secondary students of Biology and Human Biology.


Distributed, High-Performance and Grid Computing in Computational Biology

Distributed, High-Performance and Grid Computing in Computational Biology

Author: Werner Dubitzky

Publisher: Springer

Published: 2007-03-07

Total Pages: 202

ISBN-13: 3540699686

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The book constitutes the refereed proceedings of the International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology, GCCB 2006, held in Eilat, Israel in January 2007 in conjunction with the 5th European Conference on Computational Biology, ECCB 2006. The 13 revised full papers presented were carefully reviewed and selected from many high quality submissions.