Ultrafast Time-resolved Infrared Spectroscopy of Molecular Monolayers and Solute-solvent Complexes

Ultrafast Time-resolved Infrared Spectroscopy of Molecular Monolayers and Solute-solvent Complexes

Author: Daniel Edward Rosenfeld

Publisher:

Published: 2012

Total Pages:

ISBN-13:

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Ultrafast time-resolved infrared spectroscopy has been a powerful tool in resolving and studying ultrafast motions in bulk chemical and biological systems. The utility of ultrafast time-resolved infrared spectroscopy is illustrated through two studies of solute-solvent complexes. The same experimental methods used to study bulk systems are then extended to study surface systems through the development of both surface molecular probes and new spectroscopic techniques. Ultrafast polarization and wavelength selective IR pump-probe spectroscopy is used to measure the inertial and long time orientational dynamics of pi-hydrogen bonding complexes. The complexes studied are composed of phen-d-ol (phenol-OD) and various pi-base solvents with different electron donating or withdrawing substituents. The inertial motion is found to be insensitive to the strength of the hydrogen bond, but highly sensitive to the local solvent structure as reported on by inhomogeneous line broadening. The local solvent structure therefore acts as the controlling influence in determining the extent of inertial orientational relaxation, and thus the angular potential. Variation in the pi-hydrogen bond strength is of secondary importance. Hydrogen bonded complexes between phenol and phenylacetylene are studied using ultrafast two-dimensional infrared (2D IR) chemical exchange spectroscopy. Phenylacetylene has two possible pi-hydrogen bonding acceptor sites (phenyl or acetylene) that compete for hydrogen bond donors in solution at room temperature. The chemical exchange process occurs in ~5 ps, and is assigned to direct hydrogen bond migration along the phenylacetylene molecule. The observation of direct hydrogen bond migration can have implications for macromolecular systems. 2D IR vibrational echo spectroscopy and heterodyne detected transient grating (HDTG) spectroscopy (an ultra-sensitive analog of pump-probe spectroscopy) are developed as means of study of the structural and vibrational dynamics of surfaces. The surfaces studied are silica surfaces functionalized with a transition metal carbonyl complex, tricarbonyl (1,10)-phenanthroline rhenium chloride. The functionalization process produces chromophore surface density of 1-2 × 10^14 per cm squared. The high surface density achieved indicates that energy transfer between molecules on the surface could impact the experimental observables probed in 2D IR and HDTG spectroscopy. The theory of excitation transfer induced spectral diffusion has been developed and is capable of calculating the effect of the energy transfer on any spectroscopic observable through a master equation approach. Initial estimates of surface structural dynamics, based on both experimental 2D IR data and theoretical calculations, showed sub-100ps structural dynamics in the molecular monolayers even without the presence of solvent. Furthermore, solvent is shown to accelerate the structural dynamics in a manner that is different from that of bulk solution. Additional surface density dependent experiments indicate the negligible nature of excitation transfer even in these dense systems. The functionalized molecular monolayers are found to have a ~40 ps structural dynamics relaxation time in the absence of solvent. Further investigation of the effects of solvents on the RePhen(CO)3Cl monolayers has been carried out. Immersion in solvent is found to change the infrared spectrum, structural dynamics and vibrational dynamics in ways that differ from the changes evidenced in the bulk. The monolayers were immersed in both solvents that can dissolve RePhen(CO)3Cl and those that cannot. For both hexadecane and D2O, which cannot dissolve the headgroup, the structural dynamics of the monolayer are slowed by the presence of solvent while the vibrational dynamics are not impacted. Polar organic solvents, which can dissolve the headgroup, accelerate the dynamics. Dimethylformamide (DMF) is found to have a particularly strong effect on the structural dynamics of the monolayers, accelerating the timescale from 40 ps to 15 ps, yet DMF has little impact on the vibrational dynamics. Chloroform is found to enhance the vibrational lifetime of the CO symmetric stretch of the RePhen(CO)3Cl headgroups in the monolayer by 50%. These results indicate that the properties of thin films can be modified by the presence of solvent, even in the case when the solvent is repelled by the monolayer.


Spectroscopy and Computation of Hydrogen-BondedSystems

Spectroscopy and Computation of Hydrogen-BondedSystems

Author: Marek J. Wójcik

Publisher: John Wiley & Sons

Published: 2023-03-27

Total Pages: 548

ISBN-13: 3527349723

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Comprehensive spectroscopic view of the state-of the-art in theoretical and experimental hydrogen bonding research Spectroscopy and Computation of Hydrogen-Bonded Systems includes diverse research efforts spanning the frontiers of hydrogen bonding as revealed through state-of-the-art spectroscopic and computational methods, covering a broad range of experimental and theoretical methodologies used to investigate and understand hydrogen bonding. The work explores the key quantitative relationships between fundamental vibrational frequencies and hydrogen-bond length/strength and provides an extensive reference for the advancement of scientific knowledge on hydrogen-bonded systems. Theoretical models of vibrational landscapes in hydrogen-bonded systems, as well as kindred studies designed to interpret intricate spectral features in gaseous complexes, liquids, crystals, ices, polymers, and nanocomposites, serve to elucidate the provenance of spectroscopic findings. Results of experimental and theoretical studies on multidimensional proton transfer are also presented. Edited by two highly qualified researchers in the field, sample topics covered in Spectroscopy and Computation of Hydrogen-Bonded Systems include: Quantum-mechanical treatments of tunneling-mediated pathways in enzyme catalysis and molecular-dynamics simulations of structure and dynamics in hydrogen-bonded systems Mechanisms of multiple proton-transfer pathways in hydrogen-bonded clusters and modern spectroscopic tools with synergistic quantum-chemical analyses Mechanistic investigations of deuterium kinetic isotope effects, ab initio path integral methods, and molecular-dynamics simulations Key relationships that exist between fundamental vibrational frequencies and hydrogen-bond length/strength Analogous spectroscopic and semi-empirical computational techniques examining larger hydrogen-bonded systems Reflecting the polymorphic nature of hydrogen bonding and bringing together the latest experimental and computational work in the field, Spectroscopy and Computation of Hydrogen-Bonded Systems is an essential resource for chemists and other scientists involved in projects or research that intersects with the topics covered within.


Ultrafast Hydrogen Bonding Dynamics and Proton Transfer Processes in the Condensed Phase

Ultrafast Hydrogen Bonding Dynamics and Proton Transfer Processes in the Condensed Phase

Author: Thomas Elsaesser

Publisher: Springer Science & Business Media

Published: 2013-03-14

Total Pages: 193

ISBN-13: 9401700591

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Hydrogen bonds represent type of molecular interaction that determines the structure and function of a large variety of molecular systems. The elementary dynamics of hydrogen bonds and related proton transfer reactions, both occurring in the ultra fast time domain between 10-14 and 10-11s, form a research topic of high current interest. In this book addressing scientists and graduate students in physics, chemistry and biology, the ultra fast dynamics of hydrogen bonds and proton transfer in the condensed phase are reviewed by leading scientists, documenting the state of the art in this exciting field from the viewpoint of theory and experiment. The nonequilibrium behavior of hydrogen-bonded liquids and intramolecular hydrogen bonds as well as photo induced hydrogen and proton transfer are covered in 7 chapters, making reference to the most recent literature.


Ultrafast Infrared And Raman Spectroscopy

Ultrafast Infrared And Raman Spectroscopy

Author: M.D. Fayer

Publisher: CRC Press

Published: 2001-03-16

Total Pages: 736

ISBN-13: 9780203904763

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A description of procedures for probing bond activation, H-bonded systems, molecular dynamical mechanisms, vibrational dephasing, simple liquids, and proteins and energy flow effects using ultrafast vibrational spectroscopy experiments. It discusses experimental and theoretical methods of ultrafast infrared and Raman measurements.


In-situ Spectroscopic Studies of Adsorption at the Electrode and Electrocatalysis

In-situ Spectroscopic Studies of Adsorption at the Electrode and Electrocatalysis

Author: Shi-Gang Sun

Publisher: Elsevier

Published: 2011-08-11

Total Pages: 559

ISBN-13: 0080489060

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In-Situ Spectroscopic Studies of Adsorption at the Electrode and Electrocatalysis is a new reference on in-situ spectroscopic techniques/applications, fundamentals of electrocatalysis at molecule level, and progresses within electrochemical surface science. Presenting both essential background knowledge at graduate level and original research within the fields of spectroscopy, electrochemistry, and surface science. Featuring 15 chapters by prominent worldwide scholars, based on their recent progress in different aspects of in-situ spectroscopy studies, this book will appeal to a wide audience of scientists. In summary this book is highly suitable for graduates learning basic concepts and advanced applications of in-situ spectroscopy, electrocatalysis and electrode adsorptions. * Written by the most active scientists in the fields of spectroscopy, electrochemistry and surface science* Essential background knowledge for graduate students* A modern reference of cutting-edge scientific research


Molecular Liquids: New Perspectives in Physics and Chemistry

Molecular Liquids: New Perspectives in Physics and Chemistry

Author: José Teixeira

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 570

ISBN-13: 9401128324

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In its combination of an advanced teaching standpoint with an emphasis on new perspectives and recent advances in the study of liquids formed by simple molecules, Molecular Liquids: New Perspectives in Physics and Chemistry provides a clear, understandable guide through the complexities of the subject. A wide range of topics is covered in the areas of intermolecular forces, statistical mechanics, the microscopic dynamics of simple liquids, thermodynamics of solutions, nonequilibrium molecular dynamics, molecular models for transport and relaxation in fluids, liquid simulations, statistical band shape theories, conformational studies, fast-exchange dynamics, and hydrogen bonding. The experimental techniques covered include: neutron scattering, X-ray diffraction, IR, Raman, NMR, quasielastic neutron scattering, and high-precision, time-resolved coherent Raman spectroscopy.


The Hydrogen Bond and the Water Molecule

The Hydrogen Bond and the Water Molecule

Author: Yves Marechal

Publisher: Elsevier

Published: 2006-12-11

Total Pages: 333

ISBN-13: 0080469299

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The Hydrogen Bond and the Water Molecule offers a synthesis of what is known and currently being researched on the topic of hydrogen bonds and water molecules. The most simple water molecular, H2O, is a fascinating but poorly understood molecule. Its unique ability to attract an exceptionally large number of hydrogen bonds induces the formation of a dense "hydrogen bond network" that has the potential to modify the properties of the surrounding molecules and their reactivities. The crucial role that water molecules play is described in this book. The author begins by providing an overview of the thermodynamical and structural properties of H-bonds before examining their much less known dynamical properties, which makes them appear as centres of reactivity. Methods used to observe these components are also reviewed. In the second part of the book the role played by the dense H-bond network developed by H2O molecules is examined. First in ice, where it has important atmospheric consequences, then in liquid water, and finally in macromolecules where it sheds some original light on the fundamental question "How is it that without water and hydrogen bonds life would not exist?". This book will be of interest to researchers in the fields of physics, chemistry, biochemistry and molecular biology. It can also serve as a teaching aid for students attending course in chemical physics, chemistry or molecular biology. Engineers involved the water industry would benefit from reading this book, as would scientists working in pharmaceutics, cosmetics and materials. * overview of what is known and being researched on the topic of hydrogen bonds and water molecules * reviews methods used to observe interactions between water molecules and hydrogen bonds * examines role of H-bond network developed by H2O molecules