Mixed Effects Models for Complex Data

Mixed Effects Models for Complex Data

Author: Lang Wu

Publisher: CRC Press

Published: 2009-11-11

Total Pages: 431

ISBN-13: 9781420074086

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Although standard mixed effects models are useful in a range of studies, other approaches must often be used in correlation with them when studying complex or incomplete data. Mixed Effects Models for Complex Data discusses commonly used mixed effects models and presents appropriate approaches to address dropouts, missing data, measurement errors, censoring, and outliers. For each class of mixed effects model, the author reviews the corresponding class of regression model for cross-sectional data. An overview of general models and methods, along with motivating examples After presenting real data examples and outlining general approaches to the analysis of longitudinal/clustered data and incomplete data, the book introduces linear mixed effects (LME) models, generalized linear mixed models (GLMMs), nonlinear mixed effects (NLME) models, and semiparametric and nonparametric mixed effects models. It also includes general approaches for the analysis of complex data with missing values, measurement errors, censoring, and outliers. Self-contained coverage of specific topics Subsequent chapters delve more deeply into missing data problems, covariate measurement errors, and censored responses in mixed effects models. Focusing on incomplete data, the book also covers survival and frailty models, joint models of survival and longitudinal data, robust methods for mixed effects models, marginal generalized estimating equation (GEE) models for longitudinal or clustered data, and Bayesian methods for mixed effects models. Background material In the appendix, the author provides background information, such as likelihood theory, the Gibbs sampler, rejection and importance sampling methods, numerical integration methods, optimization methods, bootstrap, and matrix algebra. Failure to properly address missing data, measurement errors, and other issues in statistical analyses can lead to severely biased or misleading results. This book explores the biases that arise when naïve methods are used and shows which approaches should be used to achieve accurate results in longitudinal data analysis.


Generalized Inference in Repeated Measures

Generalized Inference in Repeated Measures

Author: Samaradasa Weerahandi

Publisher: John Wiley & Sons

Published: 2004-08-24

Total Pages: 382

ISBN-13: 9780471470175

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A complete guide to powerful and practical statistical modeling using MANOVA Numerous statistical applications are time dependent. Virtually all biomedical, pharmaceutical, and industrial experiments demand repeated measurements over time. The same holds true for market research and analysis. Yet conventional methods, such as the Repeated Measures Analysis of Variance (Rm ANOVA), do not always yield exact solutions, obliging practitioners to settle for asymptotic results and approximate solutions. Generalized inference in Multivariate Analysis of Variance (MANOVA), mixed models, and growth curves offer exact methods of data analysis under milder conditions without deviating from the conventional philosophy of statistical inference. Generalized Inference in Repeated Measures is a concise, self-contained guide to the use of these innovative solutions, presenting them as extensions of–rather than alternatives to–classical methods of statistical evaluation. Requiring minimal prior knowledge of statistical concepts in the evaluation of linear models, the book provides exact parametric methods for each application considered, with solutions presented in terms of generalized p-values. Coverage includes: New concepts in statistical inference, with special focus on generalized p-values and generalized confidence intervals One-way and two-way ANOVA, in cases of equal and unequal variances Basic and higher-way mixed models, including testing and estimation of fixed effects and variance components Multivariate populations, including basic inference, comparison, and analysis of variance Basic, widely used repeated measures models including crossover designs and growth curves With a comprehensive set of formulas, illustrative examples, and exercises in each chapter, Generalized Inference in Repeated Measures is ideal as both a comprehensive reference for research professionals and a text for students.


Bayesian inference with INLA

Bayesian inference with INLA

Author: Virgilio Gomez-Rubio

Publisher: CRC Press

Published: 2020-02-20

Total Pages: 330

ISBN-13: 1351707205

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The integrated nested Laplace approximation (INLA) is a recent computational method that can fit Bayesian models in a fraction of the time required by typical Markov chain Monte Carlo (MCMC) methods. INLA focuses on marginal inference on the model parameters of latent Gaussian Markov random fields models and exploits conditional independence properties in the model for computational speed. Bayesian Inference with INLA provides a description of INLA and its associated R package for model fitting. This book describes the underlying methodology as well as how to fit a wide range of models with R. Topics covered include generalized linear mixed-effects models, multilevel models, spatial and spatio-temporal models, smoothing methods, survival analysis, imputation of missing values, and mixture models. Advanced features of the INLA package and how to extend the number of priors and latent models available in the package are discussed. All examples in the book are fully reproducible and datasets and R code are available from the book website. This book will be helpful to researchers from different areas with some background in Bayesian inference that want to apply the INLA method in their work. The examples cover topics on biostatistics, econometrics, education, environmental science, epidemiology, public health, and the social sciences.


Finite Mixture and Markov Switching Models

Finite Mixture and Markov Switching Models

Author: Sylvia Frühwirth-Schnatter

Publisher: Springer Science & Business Media

Published: 2006-11-24

Total Pages: 506

ISBN-13: 0387357688

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The past decade has seen powerful new computational tools for modeling which combine a Bayesian approach with recent Monte simulation techniques based on Markov chains. This book is the first to offer a systematic presentation of the Bayesian perspective of finite mixture modelling. The book is designed to show finite mixture and Markov switching models are formulated, what structures they imply on the data, their potential uses, and how they are estimated. Presenting its concepts informally without sacrificing mathematical correctness, it will serve a wide readership including statisticians as well as biologists, economists, engineers, financial and market researchers.


Statistical Inference from Genetic Data on Pedigrees

Statistical Inference from Genetic Data on Pedigrees

Author: Elizabeth Alison Thompson

Publisher: IMS

Published: 2000

Total Pages: 194

ISBN-13: 9780940600492

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Annotation While this monograph is not about show dogs or cats, its statistical methods could be applied to tracing the pedigree of these species as well as humans. Thompson (U. of Washington) covers such topics as genetic models, population allele frequencies, kinship/inbreeding coefficients, and Monte Carlo estimation. Includes supporting tables and figures. Suitable as a supplementary text or primary text for advanced students. Lacks an index. c. Book News Inc.


Non-standard Parametric Statistical Inference

Non-standard Parametric Statistical Inference

Author: Russell Cheng

Publisher: Oxford University Press

Published: 2017

Total Pages: 431

ISBN-13: 0198505043

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This research monograph gives a unified view of non-standard estimation problems. It provides an overall mathematical framework, but also draws together and studies in detail a large number of practical problems, previously only treated separately, offering solution methods and numerical procedures for each.


The Prevention and Treatment of Missing Data in Clinical Trials

The Prevention and Treatment of Missing Data in Clinical Trials

Author: National Research Council

Publisher: National Academies Press

Published: 2010-12-21

Total Pages: 163

ISBN-13: 030918651X

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Randomized clinical trials are the primary tool for evaluating new medical interventions. Randomization provides for a fair comparison between treatment and control groups, balancing out, on average, distributions of known and unknown factors among the participants. Unfortunately, these studies often lack a substantial percentage of data. This missing data reduces the benefit provided by the randomization and introduces potential biases in the comparison of the treatment groups. Missing data can arise for a variety of reasons, including the inability or unwillingness of participants to meet appointments for evaluation. And in some studies, some or all of data collection ceases when participants discontinue study treatment. Existing guidelines for the design and conduct of clinical trials, and the analysis of the resulting data, provide only limited advice on how to handle missing data. Thus, approaches to the analysis of data with an appreciable amount of missing values tend to be ad hoc and variable. The Prevention and Treatment of Missing Data in Clinical Trials concludes that a more principled approach to design and analysis in the presence of missing data is both needed and possible. Such an approach needs to focus on two critical elements: (1) careful design and conduct to limit the amount and impact of missing data and (2) analysis that makes full use of information on all randomized participants and is based on careful attention to the assumptions about the nature of the missing data underlying estimates of treatment effects. In addition to the highest priority recommendations, the book offers more detailed recommendations on the conduct of clinical trials and techniques for analysis of trial data.


Statistical Inference as Severe Testing

Statistical Inference as Severe Testing

Author: Deborah G. Mayo

Publisher: Cambridge University Press

Published: 2018-09-20

Total Pages: 503

ISBN-13: 1108563309

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Mounting failures of replication in social and biological sciences give a new urgency to critically appraising proposed reforms. This book pulls back the cover on disagreements between experts charged with restoring integrity to science. It denies two pervasive views of the role of probability in inference: to assign degrees of belief, and to control error rates in a long run. If statistical consumers are unaware of assumptions behind rival evidence reforms, they can't scrutinize the consequences that affect them (in personalized medicine, psychology, etc.). The book sets sail with a simple tool: if little has been done to rule out flaws in inferring a claim, then it has not passed a severe test. Many methods advocated by data experts do not stand up to severe scrutiny and are in tension with successful strategies for blocking or accounting for cherry picking and selective reporting. Through a series of excursions and exhibits, the philosophy and history of inductive inference come alive. Philosophical tools are put to work to solve problems about science and pseudoscience, induction and falsification.


Statistical Inference, Econometric Analysis and Matrix Algebra

Statistical Inference, Econometric Analysis and Matrix Algebra

Author: Bernhard Schipp

Publisher: Springer Science & Business Media

Published: 2008-11-27

Total Pages: 438

ISBN-13: 3790821217

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This Festschrift is dedicated to Götz Trenkler on the occasion of his 65th birthday. As can be seen from the long list of contributions, Götz has had and still has an enormous range of interests, and colleagues to share these interests with. He is a leading expert in linear models with a particular focus on matrix algebra in its relation to statistics. He has published in almost all major statistics and matrix theory journals. His research activities also include other areas (like nonparametrics, statistics and sports, combination of forecasts and magic squares, just to mention afew). Götz Trenkler was born in Dresden in 1943. After his school years in East G- many and West-Berlin, he obtained a Diploma in Mathematics from Free University of Berlin (1970), where he also discovered his interest in Mathematical Statistics. In 1973, he completed his Ph.D. with a thesis titled: On a distance-generating fu- tion of probability measures. He then moved on to the University of Hannover to become Lecturer and to write a habilitation-thesis (submitted 1979) on alternatives to the Ordinary Least Squares estimator in the Linear Regression Model, a topic that would become his predominant ?eld of research in the years to come.


Analyzing Microarray Gene Expression Data

Analyzing Microarray Gene Expression Data

Author: Geoffrey J. McLachlan

Publisher: John Wiley & Sons

Published: 2005-02-18

Total Pages: 366

ISBN-13: 0471726125

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A multi-discipline, hands-on guide to microarray analysis of biological processes Analyzing Microarray Gene Expression Data provides a comprehensive review of available methodologies for the analysis of data derived from the latest DNA microarray technologies. Designed for biostatisticians entering the field of microarray analysis as well as biologists seeking to more effectively analyze their own experimental data, the text features a unique interdisciplinary approach and a combined academic and practical perspective that offers readers the most complete and applied coverage of the subject matter to date. Following a basic overview of the biological and technical principles behind microarray experimentation, the text provides a look at some of the most effective tools and procedures for achieving optimum reliability and reproducibility of research results, including: An in-depth account of the detection of genes that are differentially expressed across a number of classes of tissues Extensive coverage of both cluster analysis and discriminant analysis of microarray data and the growing applications of both methodologies A model-based approach to cluster analysis, with emphasis on the use of the EMMIX-GENE procedure for the clustering of tissue samples The latest data cleaning and normalization procedures The uses of microarray expression data for providing important prognostic information on the outcome of disease