Properties and Chemistry of Biomolecular Systems
Properties and Chemistry of Biomolecular Systems

Author: N. Russo

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 411

ISBN-13: 9401108226

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During the last decade, interest in the chemistry of biological systems, as well as in molecular chemical engineering, has grown considerably. Many fields in modern chemistry are contributing to a better understanding of elementary mechanisms of various biological processes and this has resulted in the development of new classes of organic and organometallic compounds with specific and high biological activity. Such a multidisciplinary approach creates opportunities for an exchange of ideas and the need to create a common language. This volume contains a collection of papers, written by leading scientists which collectively provide a rich overview of current research activities relating to the chemistry of biological systems. These papers emphasize the interdisciplinary nature of this research. For researchers in academia and industry whose work involves the chemistry and properties of biomolecular systems.

Spectroscopy and Modeling of Biomolecular Building Blocks
Spectroscopy and Modeling of Biomolecular Building Blocks

Author: Jean-Pierre Schermann

Publisher: Elsevier

Published: 2007-10-16

Total Pages: 499

ISBN-13: 0080558224

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Spectroscopy and Modeling of Biomolecular Building Blocks presents an overview of recent advances in the intertwining of the following research fields: photon and electron spectroscopy, quantum chemistry, modelling and mass-spectrometry. The coupling of these disciplines offers a new point of view to the understanding of isolated elementary building blocks of biomolecules and their assemblies. It allows the unambiguous separation between intrinsic properties of biomolecular systems and those induced by the presence of their environment. The first chapters provide background in modelling (I), frequency-resolved spectroscopy using microwave, infrared and UV photons, time-resolved spectroscopy in the femtosecond domain and energy-resolved electron spectroscopy (II) and production of gas-phase neutral and ionic biomolecular species, mass-spectrometry, ion mobility and BIRD techniques (III). Chapter IV is devoted to case studies of gas-phase experimental investigations coupled to quantum or classical calculations. The topics are structural studies of nucleobases and oligonucleotides, peptides and proteins, sugars; neuromolecules; non-covalent complexes; chiral systems, interactions of low-energy electrons with biomolecules in the radiation chemistry context and very large gas-phase biomolecular systems. The fifth chapter concerns the link between gas-phase and liquid-phase. Different treatments of solvation are illustrated through examples pointing out the influence of progressive addition of water molecules upon properties of nucleobases, peptides, sugars and neuromolecules. - Offer a new perspective to the understanding of isolated elementary building blocks of bio molecules - Includes case studies of experimental investigations coupled to quantum or classical calculations

Computational Modeling And Simulations Of Biomolecular Systems
Computational Modeling And Simulations Of Biomolecular Systems

Author: Benoit Roux

Publisher: World Scientific

Published: 2021-08-23

Total Pages: 209

ISBN-13: 9811232776

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This textbook originated from the course 'Simulation, Modeling, and Computations in Biophysics' that I have taught at the University of Chicago since 2011. The students typically came from a wide range of backgrounds, including biology, physics, chemistry, biochemistry, and mathematics, and the course was intentionally adapted for senior undergraduate students and graduate students. This is not a highly technical book dedicated to specialists. The objective is to provide a broad survey from the physical description of a complex molecular system at the most fundamental level, to the type of phenomenological models commonly used to represent the function of large biological macromolecular machines.The key conceptual elements serving as building blocks in the formulation of different levels of approximations are introduced along the way, aiming to clarify as much as possible how they are interrelated. The only assumption is a basic familiarity with simple mathematics (calculus and integrals, ordinary differential equations, matrix linear algebra, and Fourier-Laplace transforms).

Molecular Chemistry and Biomolecular Engineering
Molecular Chemistry and Biomolecular Engineering

Author: Lionello Pogliani

Publisher: CRC Press

Published: 2019-09-12

Total Pages: 270

ISBN-13: 042959531X

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This new volume is devoted to molecular chemistry and its applications to the fields of biology. It looks at the integration of molecular chemistry with biomolecular engineering, with the goal of creating new biological or physical properties to address scientific or societal challenges. It takes a both multidisciplinary and interdisciplinary perspective on the interface between molecular biology, biophysical chemistry, and chemical engineering. Molecular Chemistry and Biomolecular Engineering: Integrating Theory and Research with Practice provides effective support for the development of the laboratory and data analysis skills that researchers will draw on time and again for the practical aspects and also gives a solid grounding in the broader transferable skills.

Biomolecular Feedback Systems
Biomolecular Feedback Systems

Author: Domitilla Del Vecchio

Publisher: Princeton University Press

Published: 2014-10-26

Total Pages: 287

ISBN-13: 1400850509

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This book provides an accessible introduction to the principles and tools for modeling, analyzing, and synthesizing biomolecular systems. It begins with modeling tools such as reaction-rate equations, reduced-order models, stochastic models, and specific models of important core processes. It then describes in detail the control and dynamical systems tools used to analyze these models. These include tools for analyzing stability of equilibria, limit cycles, robustness, and parameter uncertainty. Modeling and analysis techniques are then applied to design examples from both natural systems and synthetic biomolecular circuits. In addition, this comprehensive book addresses the problem of modular composition of synthetic circuits, the tools for analyzing the extent of modularity, and the design techniques for ensuring modular behavior. It also looks at design trade-offs, focusing on perturbations due to noise and competition for shared cellular resources. Featuring numerous exercises and illustrations throughout, Biomolecular Feedback Systems is the ideal textbook for advanced undergraduates and graduate students. For researchers, it can also serve as a self-contained reference on the feedback control techniques that can be applied to biomolecular systems. Provides a user-friendly introduction to essential concepts, tools, and applications Covers the most commonly used modeling methods Addresses the modular design problem for biomolecular systems Uses design examples from both natural systems and synthetic circuits Solutions manual (available only to professors at press.princeton.edu) An online illustration package is available to professors at press.princeton.edu

Concepts of Biology
Concepts of Biology

Author: Samantha Fowler

Publisher:

Published: 2023-05-12

Total Pages: 0

ISBN-13: 9781739015503

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Black & white print. Concepts of Biology is designed for the typical introductory biology course for nonmajors, covering standard scope and sequence requirements. The text includes interesting applications and conveys the major themes of biology, with content that is meaningful and easy to understand. The book is designed to demonstrate biology concepts and to promote scientific literacy.

Solvation Effects on Molecules and Biomolecules
Solvation Effects on Molecules and Biomolecules

Author: Sylvio Canuto

Publisher: Springer Science & Business Media

Published: 2010-07-03

Total Pages: 536

ISBN-13: 1402082703

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This volume is an interdisciplinary treatise on the theoretical approach to solvation problems. It describes the essential details of the theoretical methods and places them into the context of modern applications, and hence is of broad interest to theoreticians and experimentalists. The assembly of these modern methods and applications into one volume is a unique contribution to date and gives a broad and ample description of the field in its present stage of development.

Inspired by Biology
Inspired by Biology

Author: National Research Council

Publisher: National Academies Press

Published: 2008-06-17

Total Pages: 170

ISBN-13: 0309134293

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Scientists have long desired to create synthetic systems that function with the precision and efficiency of biological systems. Using new techniques, researchers are now uncovering principles that could allow the creation of synthetic materials that can perform tasks as precise as biological systems. To assess the current work and future promise of the biology-materials science intersection, the Department of Energy and the National Science Foundation asked the NRC to identify the most compelling questions and opportunities at this interface, suggest strategies to address them, and consider connections with national priorities such as healthcare and economic growth. This book presents a discussion of principles governing biomaterial design, a description of advanced materials for selected functions such as energy and national security, an assessment of biomolecular materials research tools, and an examination of infrastructure and resources for bridging biological and materials science.

Coarse-Graining of Condensed Phase and Biomolecular Systems
Coarse-Graining of Condensed Phase and Biomolecular Systems

Author: Gregory A. Voth

Publisher: CRC Press

Published: 2008-09-22

Total Pages: 492

ISBN-13: 1420059564

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Exploring recent developments in the field, Coarse-Graining of Condensed Phase and Biomolecular Systems examines systematic ways of constructing coarse-grained representations for complex systems. It explains how this approach can be used in the simulation and modeling of condensed phase and biomolecular systems. Assembling some of the most influential, world-renowned researchers in the field, this book covers the latest developments in the coarse-grained molecular dynamics simulation and modeling of condensed phase and biomolecular systems. Each chapter focuses on specific examples of evolving coarse-graining methodologies and presents results for a variety of complex systems. The contributors discuss the minimalist, inversion, and multiscale approaches to coarse-graining, along with the emerging challenges of coarse-graining. They also connect atomic-level information with new coarse-grained representations of complex systems, such as lipid bilayers, proteins, peptides, and DNA.