Protein Bioinformatics

Protein Bioinformatics

Author: M. Michael Gromiha

Publisher: Academic Press

Published: 2011-04-21

Total Pages: 349

ISBN-13: 0123884241

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One of the most pressing tasks in biotechnology today is to unlock the function of each of the thousands of new genes identified every day. Scientists do this by analyzing and interpreting proteins, which are considered the task force of a gene. This single source reference covers all aspects of proteins, explaining fundamentals, synthesizing the latest literature, and demonstrating the most important bioinformatics tools available today for protein analysis, interpretation and prediction. Students and researchers of biotechnology, bioinformatics, proteomics, protein engineering, biophysics, computational biology, molecular modeling, and drug design will find this a ready reference for staying current and productive in this fast evolving interdisciplinary field. - Explains all aspects of proteins including sequence and structure analysis, prediction of protein structures, protein folding, protein stability, and protein interactions - Presents a cohesive and accessible overview of the field, using illustrations to explain key concepts and detailed exercises for students.


Nucleic Acid Structure and Recognition

Nucleic Acid Structure and Recognition

Author: Stephen Neidle

Publisher: Oxford University Press, USA

Published: 2002

Total Pages: 212

ISBN-13: 9780198506355

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This book provides a detailed view of the molecular structures of DNA and RNA and how they are recognised by small molecules and proteins. Extensive source material is provided, including information on relevant web sites and computer programmes. The major methods of structural investigation for nucleic acids: X-ray crystallography, NMR, and molecular modelling are reviewed and their scope and limitations (in the context of nucleic acids) discussed. Also covered are the conformational features of nucleic acid building blocks, including a description of how base-pair morphologies are analysed; the structures of DNA double helices and helical oligonucleotides, emphasising current ideas on sequence-dependent structure; and DNA-DNA interactions, including triplexes and quadruplexes. The principles of RNA folding, ribosome, and ribozyme structure are also surveyed. Both covalent and non-covalent nucleic acid interactions with small molecules are described, with the emphasis on recognition principles and sequence specific gene recognition. The principles of protein - nucleic acid are covered, focussing on regulatory proteins. Nucleic Acid Structure and Recognition will therefore equip readers with a good understanding of all the important aspects of this major field. The Nucleic Acid Database (NDB) crystallographic and NMR structures for the nucleic acid structures described in the book are freely available through the Nucleic Acid Structure and Recognition website.


Nucleic Acid–Protein Recognition

Nucleic Acid–Protein Recognition

Author: Henry Vogel

Publisher: Elsevier

Published: 2012-12-02

Total Pages: 614

ISBN-13: 0323144535

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Nucleic Acid-Protein Recognition covers the proceedings of a symposium on ""Nucleic Acid-Protein Recognition"", held at Arden House, Harriman Campus of Columbia University on May 30-June 1, 1976. The symposium inaugurated the ""P & S Biomedical Sciences Symposia"" under the sponsorship of the College of Physicians and Surgeons of Columbia University. This book is organized into nine part encompassing 31 chapters. The opening parts describe the principles of DNA replication and the unique chromatin structure. These parts also examine the physical chemistry of the interactions of melting proteins with nucleic acids. The third part presents the different types of approaches that can be used to study the function of RNA polymerases and the development of a cell-free system that favors Pol II-catalyzed transcription from type 2 adenovirus DNA. Parts IV and V deal with the sequence determination of wild-type and mutant repressor and the restriction and modification of DNA endonucleases, while parts VI and VII focus of the recognition of tRNA. Part VIII discusses some significant studies on the assembly of ribosomes and the principles of ribosomal interactions. Lastly, Part IX considers the role of small RNA template in the reaction mechanism of RNA replicases and ribonucleases. This part also surveys the so-called RNase III cleavage of different types of RNA and the structure of nucleic acid-protein complexes.


Protein-Nucleic Acid Interactions

Protein-Nucleic Acid Interactions

Author: Phoebe A. Rice

Publisher: Royal Society of Chemistry

Published: 2008-05-22

Total Pages: 417

ISBN-13: 0854042725

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This book provides both in-depth background and up-to-date information in this area. The chapters are organized by general themes and principles, written by experts who illustrate topics with current findings. Topics covered include: - the role of ions and hydration in protein-nucleic acid interactions - transcription factors and combinatorial specificity - indirect readout of DNA sequence - single-stranded nucleic acid binding proteins - nucleic acid junctions and proteins, - RNA protein recognition - recognition of DNA damage. It will be a key reference for both advanced students and established scientists wishing to broaden their horizons.


Principles of Nucleic Acid Structure

Principles of Nucleic Acid Structure

Author: Wolfram Saenger

Publisher: Springer Science & Business Media

Published: 2013-12-01

Total Pages: 574

ISBN-13: 1461251907

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New textbooks at all levels of chemistry appear with great regularity. Some fields like basic biochemistry, organic reaction mechanisms, and chemical ther modynamics are well represented by many excellent texts, and new or revised editions are published sufficiently often to keep up with progress in research. However, some areas of chemistry, especially many of those taught at the grad uate level, suffer from a real lack of up-to-date textbooks. The most serious needs occur in fields that are rapidly changing. Textbooks in these subjects usually have to be written by scientists actually involved in the research which is advancing the field. It is not often easy to persuade such individuals to set time aside to help spread the knowledge they have accumulated. Our goal, in this series, is to pinpoint areas of chemistry where recent progress has outpaced what is covered in any available textbooks, and then seek out and persuade experts in these fields to produce relatively concise but instructive introductions to their fields. These should serve the needs of one semester or one quarter graduate courses in chemistry and biochemistry. In some cases the availability of texts in active research areas should help stimulate the creation of new courses. CHARLES R. CANTOR New York Preface This monograph is based on a review on polynucleotide structures written for a book series in 1976.


Protein-nucleic Acid Interaction

Protein-nucleic Acid Interaction

Author: Wolfram Saenger

Publisher:

Published: 1989

Total Pages: 230

ISBN-13:

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This volume contains a series of essays which describe a range of problems in the field of nucleic-acid interactions, investigated by a variety of techniques. An introductory chapter on DNA-protein interactions in the regulation of gene expression is followed by papers on selected model systems.


Modified Nucleic Acids

Modified Nucleic Acids

Author: Kazuhiko Nakatani

Publisher: Springer

Published: 2016-04-04

Total Pages: 280

ISBN-13: 3319271113

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This book spans diverse aspects of modified nucleic acids, from chemical synthesis and spectroscopy to in vivo applications, and highlights studies on chemical modifications of the backbone and nucleobases. Topics discussed include fluorescent pyrimidine and purine analogs, enzymatic approaches to the preparation of modified nucleic acids, emission and electron paramagnetic resonance (EPR) spectroscopy for studying nucleic acid structure and dynamics, non-covalent binding of low- and high-MW ligands to nucleic acids and the design of unnatural base pairs. This unique book addresses new developments and is designed for graduate level and professional research purposes.


Regulation of Gene Expression by Small RNAs

Regulation of Gene Expression by Small RNAs

Author: Rajesh K. Gaur

Publisher: CRC Press

Published: 2009-04-27

Total Pages: 440

ISBN-13: 1420008706

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New Findings Revolutionize Concepts of Gene FunctionEndogenous small RNAs have been found in various organisms, including humans, mice, flies, worms, fungi, and bacteria. Furthermore, it's been shown that microRNAs acting as cellular rheostats have the ability to modulate gene expression. In higher eukaryotes, microRNAs may regulate as much as 50 p


Nucleic Acids Chemistry

Nucleic Acids Chemistry

Author: Ramon Eritja

Publisher: Walter de Gruyter GmbH & Co KG

Published: 2021-01-18

Total Pages: 380

ISBN-13: 311063953X

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This book compiles recent research on the modification of nucleic acids. It covers backbone modifications and conjugation of lipids, peptides and proteins to oligonucleotides and their therapeutic use. Synthesis and application in biomedicine and nanotechnology of aptamers, fluorescent and xeno nucleic acids, DNA repair and artificial DNA are discussed as well.