Data-driven Modelling of Structured Populations
Data-driven Modelling of Structured Populations

Author: Stephen P. Ellner

Publisher: Springer

Published: 2016-05-13

Total Pages: 339

ISBN-13: 3319288938

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This book is a “How To” guide for modeling population dynamics using Integral Projection Models (IPM) starting from observational data. It is written by a leading research team in this area and includes code in the R language (in the text and online) to carry out all computations. The intended audience are ecologists, evolutionary biologists, and mathematical biologists interested in developing data-driven models for animal and plant populations. IPMs may seem hard as they involve integrals. The aim of this book is to demystify IPMs, so they become the model of choice for populations structured by size or other continuously varying traits. The book uses real examples of increasing complexity to show how the life-cycle of the study organism naturally leads to the appropriate statistical analysis, which leads directly to the IPM itself. A wide range of model types and analyses are presented, including model construction, computational methods, and the underlying theory, with the more technical material in Boxes and Appendices. Self-contained R code which replicates all of the figures and calculations within the text is available to readers on GitHub. Stephen P. Ellner is Horace White Professor of Ecology and Evolutionary Biology at Cornell University, USA; Dylan Z. Childs is Lecturer and NERC Postdoctoral Fellow in the Department of Animal and Plant Sciences at The University of Sheffield, UK; Mark Rees is Professor in the Department of Animal and Plant Sciences at The University of Sheffield, UK.

Integrated Population Models
Integrated Population Models

Author: Michael Schaub

Publisher: Academic Press

Published: 2021-11-12

Total Pages: 640

ISBN-13: 0128209151

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Integrated Population Models: Theory and Ecological Applications with R and JAGS is the first book on integrated population models, which constitute a powerful framework for combining multiple data sets from the population and the individual levels to estimate demographic parameters, and population size and trends. These models identify drivers of population dynamics and forecast the composition and trajectory of a population. Written by two population ecologists with expertise on integrated population modeling, this book provides a comprehensive synthesis of the relevant theory of integrated population models with an extensive overview of practical applications, using Bayesian methods by means of case studies. The book contains fully-documented, complete code for fitting all models in the free software, R and JAGS. It also includes all required code for pre- and post-model-fitting analysis. Integrated Population Models is an invaluable reference for researchers and practitioners involved in population analysis, and for graduate-level students in ecology, conservation biology, wildlife management, and related fields. The text is ideal for self-study and advanced graduate-level courses. - Offers practical and accessible ecological applications of IPMs (integrated population models) - Provides full documentation of analyzed code in the Bayesian framework - Written and structured for an easy approach to the subject, especially for non-statisticians

Structured-Population Models in Marine, Terrestrial, and Freshwater Systems
Structured-Population Models in Marine, Terrestrial, and Freshwater Systems

Author: Shripad Tuljapurkar

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 644

ISBN-13: 1461559731

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In the summer of 1993, twenty-six graduate and postdoctoral stu dents and fourteen lecturers converged on Cornell University for a summer school devoted to structured-population models. This school was one of a series to address concepts cutting across the traditional boundaries separating terrestrial, marine, and freshwa ter ecology. Earlier schools resulted in the books Patch Dynamics (S. A. Levin, T. M. Powell & J. H. Steele, eds., Springer-Verlag, Berlin, 1993) and Ecological Time Series (T. M. Powell & J. H. Steele, eds., Chapman and Hall, New York, 1995); a book on food webs is in preparation. Models of population structure (differences among individuals due to age, size, developmental stage, spatial location, or genotype) have an important place in studies of all three kinds of ecosystem. In choosing the participants and lecturers for the school, we se lected for diversity-biologists who knew some mathematics and mathematicians who knew some biology, field biologists sobered by encounters with messy data and theoreticians intoxicated by the elegance of the underlying mathematics, people concerned with long-term evolutionary problems and people concerned with the acute crises of conservation biology. For four weeks, these perspec tives swirled in discussions that started in the lecture hall and carried on into the sweltering Ithaca night. Diversity mayor may not increase stability, but it surely makes things interesting.

Discrete-Time Dynamics of Structured Populations and Homogeneous Order-Preserving Operators
Discrete-Time Dynamics of Structured Populations and Homogeneous Order-Preserving Operators

Author: Horst R. Thieme

Publisher: American Mathematical Society

Published: 2024-05-07

Total Pages: 357

ISBN-13: 1470474654

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A fundamental question in the theory of discrete and continuous-time population models concerns the conditions for the extinction or persistence of populations – a question that is addressed mathematically by persistence theory. For some time, it has been recognized that if the dynamics of a structured population are mathematically captured by continuous or discrete semiflows and if these semiflows have first-order approximations, the spectral radii of certain bounded linear positive operators (better known as basic reproduction numbers) act as thresholds between population extinction and persistence. This book combines the theory of discrete-time dynamical systems with applications to population dynamics with an emphasis on spatial structure. The inclusion of two sexes that must mate to produce offspring leads to the study of operators that are (positively) homogeneous (of degree one) and order-preserving rather than linear and positive. While this book offers an introduction to ordered normed vector spaces, some background in real and functional analysis (including some measure theory for a few chapters) will be helpful. The appendix and selected exercises provide a primer about basic concepts and about relevant topics one may not find in every analysis textbook.

Theoretical Ecology
Theoretical Ecology

Author: Kevin S. McCann

Publisher: Oxford University Press

Published: 2020-05-11

Total Pages: 352

ISBN-13: 0192557785

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Theoretical Ecology: concepts and applications continues the authoritative and established sequence of theoretical ecology books initiated by Robert M. May which helped pave the way for ecology to become a more robust theoretical science, encouraging the modern biologist to better understand the mathematics behind their theories. This latest instalment builds on the legacy of its predecessors with a completely new set of contributions. Rather than placing emphasis on the historical ideas in theoretical ecology, the Editors have encouraged each contribution to: synthesize historical theoretical ideas within modern frameworks that have emerged in the last 10-20 years (e.g. bridging population interactions to whole food webs); describe novel theory that has emerged in the last 20 years from historical empirical areas (e.g. macro-ecology); and finally to cover the rapidly expanding area of theoretical ecological applications (e.g. disease theory and global change theory). The result is a forward-looking synthesis that will help guide the field through a further decade of discovery and development. It is written for upper level undergraduate students, graduate students, and researchers seeking synthesis and the state of the art in growing areas of interest in theoretical ecology, genetics, evolutionary ecology, and mathematical biology.

Demographic Methods across the Tree of Life
Demographic Methods across the Tree of Life

Author: Roberto Salguero-Gomez

Publisher: Oxford University Press

Published: 2021-08-31

Total Pages: 416

ISBN-13: 019257549X

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Demography is everywhere in our lives: from birth to death. Indeed, the universal currencies of survival, development, reproduction, and recruitment shape the performance of all species, from microbes to humans. The number of techniques for demographic data acquisition and analyses across the entire tree of life (microbes, fungi, plants, and animals) has drastically increased in recent decades. These developments have been partially facilitated by the advent of technologies such as GIS and drones, as well as analytical methods including Bayesian statistics and high-throughput molecular analyses. However, despite the universality of demography and the significant research potential that could emerge from unifying: (i) questions across taxa, (ii) data collection protocols, and (iii) analytical tools, demographic methods to date have remained taxonomically siloed and methodologically disintegrated. This is the first book to attempt a truly unified approach to demography and population ecology in order to address a wide range of questions in ecology, evolution, and conservation biology across the entire spectrum of life. This novel book provides the reader with the fundamentals of data collection, model construction, analyses, and interpretation across a wide repertoire of demographic techniques and protocols. It introduces the novice demographer to a broad range of demographic methods, including abundance-based models, life tables, matrix population models, integral projection models, integrated population models, individual based models, and more. Through the careful integration of data collection methods, analytical approaches, and applications, clearly guided throughout with fully reproducible R scripts, the book provides an up-to-date and authoritative overview of the most popular and effective demographic tools. Demographic Methods across the Tree of Life is aimed at graduate students and professional researchers in the fields of demography, ecology, animal behaviour, genetics, evolutionary biology, mathematical biology, and wildlife management.

Advances in Discrete Dynamical Systems, Difference Equations and Applications
Advances in Discrete Dynamical Systems, Difference Equations and Applications

Author: Saber Elaydi

Publisher: Springer Nature

Published: 2023-03-25

Total Pages: 534

ISBN-13: 303125225X

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​This book comprises selected papers of the 26th International Conference on Difference Equations and Applications, ICDEA 2021, held virtually at the University of Sarajevo, Bosnia and Herzegovina, in July 2021. The book includes the latest and significant research and achievements in difference equations, discrete dynamical systems, and their applications in various scientific disciplines. The book is interesting for Ph.D. students and researchers who want to keep up to date with the latest research, developments, and achievements in difference equations, discrete dynamical systems, and their applications, the real-world problems.

Unsolved Problems in Ecology
Unsolved Problems in Ecology

Author: Andrew Dobson

Publisher: Princeton University Press

Published: 2020-06-02

Total Pages: 412

ISBN-13: 0691199833

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"This volume provides a series of essays on open questions in ecology with the overarching goal being to outline to the most important, most interesting or most fundamental problems in ecology that need to be addressed. The contributions span ecological subfields, from behavioral ecology and population ecology to disease ecology and conservation and range in tone from the technical to more personal meditations on the state of the field. Many of the chapters start or end in moments of genuine curiosity, like one which takes up the question of why the world is green or another which asks what might come of a thought experiment in which we "turn-off" evolution entirely"--

Automating Data-Driven Modelling of Dynamical Systems
Automating Data-Driven Modelling of Dynamical Systems

Author: Dhruv Khandelwal

Publisher: Springer Nature

Published: 2022-02-03

Total Pages: 250

ISBN-13: 3030903435

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This book describes a user-friendly, evolutionary algorithms-based framework for estimating data-driven models for a wide class of dynamical systems, including linear and nonlinear ones. The methodology addresses the problem of automating the process of estimating data-driven models from a user’s perspective. By combining elementary building blocks, it learns the dynamic relations governing the system from data, giving model estimates with various trade-offs, e.g. between complexity and accuracy. The evaluation of the method on a set of academic, benchmark and real-word problems is reported in detail. Overall, the book offers a state-of-the-art review on the problem of nonlinear model estimation and automated model selection for dynamical systems, reporting on a significant scientific advance that will pave the way to increasing automation in system identification.