An Introduction to Statistical Genetic Data Analysis

An Introduction to Statistical Genetic Data Analysis

Author: Melinda C. Mills

Publisher: MIT Press

Published: 2020-02-18

Total Pages: 433

ISBN-13: 0262538385

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A comprehensive introduction to modern applied statistical genetic data analysis, accessible to those without a background in molecular biology or genetics. Human genetic research is now relevant beyond biology, epidemiology, and the medical sciences, with applications in such fields as psychology, psychiatry, statistics, demography, sociology, and economics. With advances in computing power, the availability of data, and new techniques, it is now possible to integrate large-scale molecular genetic information into research across a broad range of topics. This book offers the first comprehensive introduction to modern applied statistical genetic data analysis that covers theory, data preparation, and analysis of molecular genetic data, with hands-on computer exercises. It is accessible to students and researchers in any empirically oriented medical, biological, or social science discipline; a background in molecular biology or genetics is not required. The book first provides foundations for statistical genetic data analysis, including a survey of fundamental concepts, primers on statistics and human evolution, and an introduction to polygenic scores. It then covers the practicalities of working with genetic data, discussing such topics as analytical challenges and data management. Finally, the book presents applications and advanced topics, including polygenic score and gene-environment interaction applications, Mendelian Randomization and instrumental variables, and ethical issues. The software and data used in the book are freely available and can be found on the book's website.


An Introduction to Genetic Statistics

An Introduction to Genetic Statistics

Author: Oscar Kempthorne

Publisher: Wiley-Blackwell

Published: 1957

Total Pages: 574

ISBN-13:

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Elementary probability; Random mating populations; Elementary selection problems; The elementary stochastic theory of genetic populations; Inbreeding; The generation matrix theory of inbreeding; Tests of genetic hypotheses; The estimation of genetic parameters; The planning of experiments; Statistical problems in human genetics; The analysis of variation; The partition of variance; Multiple regression, correlation and adjustment of data, and path analysis; Inheritance of quantitative characters in a random mating population; Non-random mating deploid populations with one locus segregating; Correlation between relatives under inbreeding with one locus segregating; One-locus polyploid populations; Diploid populations with arbitrary number of segregating loci and arbitrary epistacy; Inbreeding with a arbitrary diploid population; Population derived from inbred lines; Infinitesimal equilibrium theory of assortative mating; Selection for quantitative characters.


An Introduction to Genetic Epidemiology

An Introduction to Genetic Epidemiology

Author: Palmer, Lyle J.

Publisher: Policy Press

Published: 2011-05-31

Total Pages: 240

ISBN-13: 1861348975

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This book brings together leading experts to provide an introduction to genetic epidemiology that begins with a primer in human molecular genetics through all the standard methods in population genetics and genetic epidemiology required for an adequate grounding in the field.


An Introduction to Genetic Algorithms

An Introduction to Genetic Algorithms

Author: Melanie Mitchell

Publisher: MIT Press

Published: 1998-03-02

Total Pages: 226

ISBN-13: 9780262631853

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Genetic algorithms have been used in science and engineering as adaptive algorithms for solving practical problems and as computational models of natural evolutionary systems. This brief, accessible introduction describes some of the most interesting research in the field and also enables readers to implement and experiment with genetic algorithms on their own. It focuses in depth on a small set of important and interesting topics—particularly in machine learning, scientific modeling, and artificial life—and reviews a broad span of research, including the work of Mitchell and her colleagues. The descriptions of applications and modeling projects stretch beyond the strict boundaries of computer science to include dynamical systems theory, game theory, molecular biology, ecology, evolutionary biology, and population genetics, underscoring the exciting "general purpose" nature of genetic algorithms as search methods that can be employed across disciplines. An Introduction to Genetic Algorithms is accessible to students and researchers in any scientific discipline. It includes many thought and computer exercises that build on and reinforce the reader's understanding of the text. The first chapter introduces genetic algorithms and their terminology and describes two provocative applications in detail. The second and third chapters look at the use of genetic algorithms in machine learning (computer programs, data analysis and prediction, neural networks) and in scientific models (interactions among learning, evolution, and culture; sexual selection; ecosystems; evolutionary activity). Several approaches to the theory of genetic algorithms are discussed in depth in the fourth chapter. The fifth chapter takes up implementation, and the last chapter poses some currently unanswered questions and surveys prospects for the future of evolutionary computation.


Applied Statistical Genetics with R

Applied Statistical Genetics with R

Author: Andrea S. Foulkes

Publisher: Springer Science & Business Media

Published: 2009-04-28

Total Pages: 264

ISBN-13: 038789554X

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Statistical genetics has become a core course in many graduate programs in public health and medicine. This book presents fundamental concepts and principles in this emerging field at a level that is accessible to students and researchers with a first course in biostatistics. Extensive examples are provided using publicly available data and the open source, statistical computing environment, R.


An Introduction to Genetic Statistics

An Introduction to Genetic Statistics

Author: Oscar Kempthorne

Publisher: Wiley-Blackwell

Published: 1957

Total Pages: 576

ISBN-13:

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Elementary probability; Random mating populations; Elementary selection problems; The elementary stochastic theory of genetic populations; Inbreeding; The generation matrix theory of inbreeding; Tests of genetic hypotheses; The estimation of genetic parameters; The planning of experiments; Statistical problems in human genetics; The analysis of variation; The partition of variance; Multiple regression, correlation and adjustment of data, and path analysis; Inheritance of quantitative characters in a random mating population; Non-random mating deploid populations with one locus segregating; Correlation between relatives under inbreeding with one locus segregating; One-locus polyploid populations; Diploid populations with arbitrary number of segregating loci and arbitrary epistacy; Inbreeding with a arbitrary diploid population; Population derived from inbred lines; Infinitesimal equilibrium theory of assortative mating; Selection for quantitative characters.


Mathematical and Statistical Methods for Genetic Analysis

Mathematical and Statistical Methods for Genetic Analysis

Author: Kenneth Lange

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 376

ISBN-13: 0387217509

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Written to equip students in the mathematical siences to understand and model the epidemiological and experimental data encountered in genetics research. This second edition expands the original edition by over 100 pages and includes new material. Sprinkled throughout the chapters are many new problems.


Statistical Genetics

Statistical Genetics

Author: Benjamin Neale

Publisher: Garland Science

Published: 2007-11-30

Total Pages: 608

ISBN-13: 1134129335

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Statistical Genetics is an advanced textbook focusing on conducting genome-wide linkage and association analysis in order to identify the genes responsible for complex behaviors and diseases. Starting with an introductory section on statistics and quantitative genetics, it covers both established and new methodologies, providing the genetic and statistical theory on which they are based. Each chapter is written by leading researchers, who give the reader the benefit of their experience with worked examples, study design, and sources of error. The text can be used in conjunction with an associated website (www.genemapping.org) that provides supplementary material and links to downloadable software.


Practical Genetic Algorithms

Practical Genetic Algorithms

Author: Randy L. Haupt

Publisher: John Wiley & Sons

Published: 2004-07-30

Total Pages: 273

ISBN-13: 0471671754

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* This book deals with the fundamentals of genetic algorithms and their applications in a variety of different areas of engineering and science * Most significant update to the second edition is the MATLAB codes that accompany the text * Provides a thorough discussion of hybrid genetic algorithms * Features more examples than first edition


Mendelian Randomization

Mendelian Randomization

Author: Stephen Burgess

Publisher: CRC Press

Published: 2015-03-06

Total Pages: 222

ISBN-13: 146657318X

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Presents the Terminology and Methods of Mendelian Randomization for Epidemiological StudiesMendelian randomization uses genetic instrumental variables to make inferences about causal effects based on observational data. It, therefore, can be a reliable way of assessing the causal nature of risk factors, such as biomarkers, for a wide range of disea